File: dh-update-R

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dh-r 20230121
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#!/usr/bin/perl

use feature say;
use strict;
use Debian::Debhelper::Buildsystem::R qw(parse_deps);
use Dpkg::Control;
use Dpkg::Deps qw(deps_parse);
use Getopt::Long;
use Pod::Usage;
use List::Util qw(first);

my $opt_desc = 0;
my $opt_help = 0;

GetOptions('help|?' => \$opt_help, 'desc|d' => \$opt_desc);
pod2usage(1) if $opt_help;

( -d "debian") or die "No debian/ directory, this tool updates existing R packaging";
( -e "DESCRIPTION") or die "No DESCRIPTION file, is this an R package?";

my $desc = Dpkg::Control->new(type => Dpkg::Control::CTRL_UNKNOWN);
$desc->load("DESCRIPTION");

my $dctrl = Dpkg::Control::Info->new();
$dctrl->load("debian/control");

my $dsrc = $dctrl->get_source();
my $dbin = $dctrl->get_pkg_by_idx(1);

my @aptavail = qx/grep-aptavail -P -s Package -n -e ^r-/;
my %apthash;
@apthash{@aptavail} = ();
my @global_dep_list = ();

sub deps_concat {
    # Dpkg::Deps::deps_concat generates "dep, , , " if some arguments are empty strings
    my $field = @_[0];
    shift @_ ;
    my (@dep_list) = @_;
    @dep_list = grep { /[a-z]/ } @dep_list;
    my $dep ;
    my @dedup_dep_list = () ;
    foreach (@dep_list) {
      $dep = $_ ;
      s/ .*// ;
      unless ($_ ~~ @global_dep_list ) {
        push @global_dep_list, $_ ;
        push @dedup_dep_list, $dep ;
      } else {
        say "Ignore duplicated dependency $dep" ;
      }
    }
    my $empty = substr('                              ', 0, length($field)+1);
    return join ",\n$empty", @dedup_dep_list;
}

my $dhrversion = "";

sub unmanaged {
    my $field = @_[0];
    shift @_;
    my $rawtext = shift;
    # deps_parse errors on substvars like ${R:Depends}, so split it manually
    my @deps = split(/\s*,\s*/m, $rawtext);
    my @keep;
    foreach my $d (@deps) {
        if ($d !~ /^(r-|debhelper(?:-compat)?|dh-r|\$)/) {
            say "I: keeping unmanaged dependency: $d";
            push(@keep, $d);
        } else {
            if ( @keep && $d =~ /^r-/ ) {
              say "I: keep also $d since it is specified behind other unmanaged depencency";
              push(@keep, $d);
            }
        }
        if ($d =~ /^dh-r\s+\(\s*>=\s*\d+\s*\)\s*$/ ) {
            $d =~ s/^dh-r\s+/ / ;
            $dhrversion = $d;
            say "I: Keep versioned Build-Depends: dh-r$dhrversion";
        }
    }
    return deps_concat($field, @keep);
}

say "I: Updating Build-Depends";
my $unmanaged_builddeps = unmanaged("Build-Depends", $dsrc->{'Build-Depends'});
if ( ! $desc->{Depends} ) { $desc->{Depends} = ""; }
if ( ! $desc->{Imports} ) { $desc->{Imports} = ""; }
if ( ! $desc->{LinkingTo} ) { $desc->{LinkingTo} = ""; }
if ( ! $desc->{SystemRequirements} ) { $desc->{SystemRequirements} = ""; }
my $rdepends = deps_concat("Build-Depends", Debian::Debhelper::Buildsystem::R::parse_depends("Depends", $desc->{Depends}, \%apthash));
my $rimports = deps_concat("Build-Depends", Debian::Debhelper::Buildsystem::R::parse_depends("Imports", $desc->{Imports}, \%apthash));
my $rlinkingto = deps_concat("Build-Depends", Debian::Debhelper::Buildsystem::R::parse_depends("LinkingTo", $desc->{LinkingTo}, \%apthash));
my $rsystemrequirements = "";
if ( $desc->{SystemRequirements} =~ /^gsl$/ ) {
  $rsystemrequirements = deps_concat("Build-Depends", 'libgsl-dev');
}
my $compiled = "no";
if ( $desc->{NeedsCompilation} ) {
  $compiled = lc $desc->{NeedsCompilation} eq "yes";
} else {
  say "W: NeedsCompilation field is missing in DESCRIPTION" ;
  # some DESCRIPTION files (for instance r-cran-deal) are lacking NeedsCompilation field
  # try to find other means for the decision whether compilation is needed
  # for the moment simply check whether src/ dir exists
  if (-e 'src' and -d 'src') {
    say "W: Directory src exists despite NeedsCompilation field is missing in DESCRIPTION" ;
    my @files = glob("src/*.[cf]");
    if ( @files ) {
      $compiled = "yes";
      say "I: Set Architecture=any since there are *.c or *.f files." ;
    }
  }
}
# reset global dep list before final concatenation
@global_dep_list = ();

my $debhelper_dep = "";
my $new_compat = first { /^debhelper-compat/ } split(/\s*,\s*/m, $dsrc->{'Build-Depends'});
if (-e 'debian/compat') {
  open my $file, '<', "debian/compat";
  my $DhVersion = <$file>;
  $DhVersion =~ s/^\s+|\s+$//g;
  $debhelper_dep = "debhelper (>= $DhVersion~)";
  close $file;
  say "I: Using debhelper compat from d/compat: $debhelper_dep";
} elsif (defined $new_compat) {
  $debhelper_dep = $new_compat;
  say "I: Using debhelper compat from build-depends: $debhelper_dep";
} else {
  die "could not determine debhelper version";
}

$dsrc->{'Build-Depends'} = deps_concat("Build-Depends", $debhelper_dep, "dh-r".$dhrversion, "r-base-dev", $rdepends, $rimports, $rlinkingto, $unmanaged_builddeps, $rsystemrequirements);
if ( $dsrc->{'Maintainer'} =~ ".*\@lists.alioth.debian.org>\$" ) {
  $dsrc->{'Maintainer'} = "Debian R Packages Maintainers <r-pkg-team\@alioth-lists.debian.net>" ;
}
if ( $dsrc->{'Maintainer'} =~ ".*lists.*\.debian\..*" ) {
  $dsrc->{'Vcs-Browser'} = "https://salsa.debian.org/r-pkg-team/".$dsrc->{'Source'};
  $dsrc->{'Vcs-Git'} = $dsrc->{'Vcs-Browser'}.".git";
}

# this will contain all build dependencies, but we don't want to remove
# binary dependencies which are also build dependencies
@global_dep_list = ();

say "I: Updating binary Depends, Recommends, Suggests";
my $unmanaged_depends = unmanaged("Depends", $dbin->{Depends});
my $unmanaged_recommends = unmanaged("Recommends", $dbin->{Recommends});
my $unmanaged_suggests = unmanaged("Suggests", $dbin->{Suggests});

# because unmanaged() calls deps_concat(), global_dep_list will already be populated
# and then dependencies will get de-duplicated when called again
@global_dep_list = ();

$dbin->{Depends} = deps_concat("Depends", "\${R:Depends}", $compiled ? "\${shlibs:Depends}" : "", "\${misc:Depends}", $unmanaged_depends);
$dbin->{Recommends} = deps_concat("Recommends", "\${R:Recommends}", $unmanaged_recommends);
$dbin->{Suggests} = deps_concat("Suggests", "\${R:Suggests}", $unmanaged_suggests);

if ( ! -e 'debian/tests/control' & ! exists $dsrc->{Testsuite} ) {
    say "W: No debian/tests/control and no Testsuite field, adding Testsuite: autopkgtest-pkg-r";
    $dsrc->{Testsuite} = "autopkgtest-pkg-r";
}

if ($opt_desc) {
    say "I: Updating package description";
    my $longdesc = $desc->{Description};
    $longdesc =~ s/^\s*//gm;
    $dbin->{Description} = "$desc->{Title}\n$longdesc";
}

open(my $fh, ">", "debian/control") or die "Can't write to debian/control";
$dctrl->output($fh);
close($fh);

__END__

=head1 NAME

dh-update-R - Updates d/control for a debian R package

=head1 SYNOPSIS

dh-update-R [options]

 Options:
    --help
    --desc Update the package description

=head1 OPTIONS

=over 8

=item B<--help>

Print this help message.

=back

=head1 DESCRIPTION

B<dh-update-R> should be run from the root of an unpacked R tarball (ie, the
directory containing DESCRIPTION), where there is already a debian/ directory.
This tools attempts to update files in debian/ after a new upstream version has
been imported.