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#!/bin/sh -e
export LC_ALL=C.UTF-8
# R DESCRIPTION files use the debian control file format
# (see R package manual 1.1.1)
pkgname=$(grep-dctrl -s Package -n '' DESCRIPTION)
bioc=$(grep-dctrl -s biocViews -n '' DESCRIPTION)
# Try to load package
echo "Test: Try to load the R library ${pkgname}"
R --no-save -e "library('${pkgname}')"
##########
# Test pkg-r-autopkgtest on Bioconductor packages only for now
if [ "$bioc" = "" ] ; then
exit 0
fi
##########
# Create temp environment for testing
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkgname}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a * $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
if [ -d debian/tests ] ; then
if [ -e debian/tests/autopkgtest-pkg-r.hook ] ; then
. debian/tests/autopkgtest-pkg-r.hook
fi
fi
NBTEST=`find tests -type f -name "*.R" | wc -l`
if [ "$NBTEST" -gt "0" ] ; then
echo "Test: Run tests for ${pkgname}"
cd tests
for testfile in *.R; do
echo "Start: ${testfile}"
R --no-save < ${testfile}
done
exit 0
fi
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