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/**
*
* orf.h:
*
* 2004-08-24 Dorothea Emig Volker Menrad
*
*/
/************************************************/
/* */
/* structs */
/* */
/************************************************/
struct orf
{
int length; // length of found orf
char *sequence; // part of the sequence in the orf
char finish;
char *dna_num; // retranslation
};
/************************************************/
/* */
/* global variable */
/* */
/************************************************/
/*********************************************/
/* */
/* functions from parameters.c */
/* */
/*********************************************/
struct seq_col* set_longest_orf(struct seq_col *in_seq_col);
struct seq* orf_finder(struct seq *in_seq_col);
//char inverse(char base);
//char translate(char first_base, char second_base, char third_base,char* dna_number_for_retranslate);
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