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#!/bin/sh
# autopkgtest check: Run some Dialign test cases
# Author: Sascha Steinbiss <satta@debian.org>
set -e
ORIGDIR=$(pwd)
DATADIR=$ORIGDIR/debian/tests/
WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
cd $WORKDIR
dialign-tx -a2000 -d3 -D /usr/share/dialign-tx $DATADIR/actin_pseudo_small.fna
dialign-tx -a2000 /usr/share/dialign-tx $DATADIR/actin.faa
dialign-tx -a2000 /usr/share/dialign-tx $DATADIR/actin_2.faa
for f in /usr/share/dialign-tx/BB1*.tfa /usr/share/dialign-tx/*.fasta; do
dialign-tx /usr/share/dialign-tx $f;
done
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