1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
|
# Define project name and identify as C++
PROJECT(DINIFTI CXX C)
# Configure man dir (but hide option for regular user)
SET( DINIFTI_MAN_DIR man/man1 CACHE PATH "Directory where manpages will be installed." )
MARK_AS_ADVANCED( DINIFTI_MAN_DIR )
# Configure toplevel directories
SET( PREFIX ${CMAKE_INSTALL_PREFIX} CACHE PATH "Top level.")
SET( INCLUDEDIR ${PREFIX}/include CACHE PATH "Include files.")
SET( LIBDIR ${PREFIX}/lib CACHE PATH "Libraries.")
# Configure CTN
FIND_PATH( DINIFTI_CTN_INCLUDE dicom.h
PATHS ${INCLUDEDIR}
PATH_SUFFIXES ctn
DOC "Path to the CTN headers." )
FIND_LIBRARY( DINIFTI_CTN_LIB ctn
PATHS ${LIBDIR}
PATH_SUFFIXES ctn
DOC "Location of the CTN library." )
# Configure NIfTI (+ znzlib)
FIND_PATH( DINIFTI_NIFTIIO_INCLUDE nifti1.h
PATHS ${INCLUDEDIR}
PATH_SUFFIXES nifti niftilib libnifti
DOC "Path to the NIfTIio library headers." )
FIND_PATH( DINIFTI_ZNZ_INCLUDE znzlib.h
PATHS ${INCLUDEDIR}
PATH_SUFFIXES znz znzlib libznz nifti libnifti niftilib
DOC "Path to the znzlib headers." )
FIND_LIBRARY( DINIFTI_NIFTIIO_LIB niftiio
PATHS ${LIBDIR}
PATH_SUFFIXES nifti libnifti niftilib
DOC "Location of the NIfTIio library." )
FIND_LIBRARY( DINIFTI_ZNZ_LIB znz
PATHS ${LIBDIR}
PATH_SUFFIXES znz libznz znzlib
DOC "Location of the znz library." )
# platform dependent stuff
INCLUDE( TestBigEndian )
TEST_BIG_ENDIAN(DINIFTI_IS_BIG_ENDIAN)
IF(DINIFTI_IS_BIG_ENDIAN)
# do whatever is necessary if system if big endian
ADD_DEFINITIONS( -DARCHITECTURE=BIG_ENDIAN_ARCHITECTURE )
ELSE(DINIFTI_IS_BIG_ENDIAN)
# for the little ones
ADD_DEFINITIONS( -DARCHITECTURE=LITTLE_ENDIAN_ARCHITECTURE )
ENDIF(DINIFTI_IS_BIG_ENDIAN)
IF(APPLE)
# put MacOS X specific configuration here
ADD_DEFINITIONS( -DOSX -DOS=OSX )
ELSEIF(${CMAKE_SYSTEM_NAME} STREQUAL "Linux")
# put Linux/Unix specific stuff here
ADD_DEFINITIONS( -DLINUX -DOS=LINUX )
ENDIF(APPLE)
ADD_DEFINITIONS( -DHAVE_ZLIB )
INCLUDE(CheckTypeSize)
CHECK_TYPE_SIZE(short SHORTSIZE)
ADD_DEFINITIONS( -DSHORTSIZE=${SHORTSIZE}*8)
CHECK_TYPE_SIZE(int INTSIZE)
ADD_DEFINITIONS( -DINTSIZE=${INTSIZE}*8)
CHECK_TYPE_SIZE(long LONGSIZE)
ADD_DEFINITIONS( -DLONGSIZE=${LONGSIZE}*8)
# add all include paths
INCLUDE_DIRECTORIES( ${CMAKE_SOURCE_DIR}/include
${DINIFTI_CTN_INCLUDE}
${DINIFTI_NIFTIIO_INCLUDE} )
# Configure default install path
IF( NOT DEFINED BINDIR )
SET( BINDIR ${PREFIX}/bin CACHE PATH "Where the executable goes.")
ENDIF( NOT DEFINED BINDIR )
# dinifti
ADD_EXECUTABLE(dinifti src/dinifti.cc src/dicomInfo.cc src/niftiout.cc)
TARGET_LINK_LIBRARIES( dinifti ${DINIFTI_CTN_LIB}
${DINIFTI_NIFTIIO_LIB}
${DINIFTI_ZNZ_LIB}
z )
# dicomhead
ADD_EXECUTABLE(dicomhead src/dicomhead.cc src/dicomInfo.cc)
TARGET_LINK_LIBRARIES( dicomhead ${DINIFTI_CTN_LIB} )
# Optional "OPTIMIZED" and "DEBUG" modes
IF(OPTIMIZED)
ADD_DEFINITIONS( -O )
SET_TARGET_PROPERTIES( dinifti dicomhead PROPERTIES LINK_FLAGS -O )
ENDIF(OPTIMIZED)
IF(DEBUG)
IF(APPLE)
ADD_DEFINITIONS(-g)
SET_TARGET_PROPERTIES( dinifti dicomhead PROPERTIES LINK_FLAGS -g )
ELSEIF(${CMAKE_SYSTEM_NAME} STREQUAL "Linux")
ADD_DEFINITIONS(-ggdb)
SET_TARGET_PROPERTIES( dinifti dicomhead PROPERTIES LINK_FLAGS -ggdb )
ENDIF(APPLE)
ENDIF(DEBUG)
# configure where to install binaries
INSTALL(TARGETS dinifti dicomhead
RUNTIME DESTINATION ${BINDIR} COMPONENT RuntimeLibraries )
# install manpages
FILE( GLOB DINIFTI_MANPAGES "man/*.1" )
INSTALL( FILES ${DINIFTI_MANPAGES} DESTINATION ${DINIFTI_MAN_DIR} )
|
