1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187
|
@@ -1,19 +1,171 @@
-api std:doc -1 api.html API
-api std:label -1 api.html#$ API
-configuration std:doc -1 configuration.html Configuration file
-configuration std:label -1 configuration.html#$ Configuration file
+# Sphinx inventory version 2
+# Project: pytools
+# Version: 2021.2.8
+# The remainder of this file is compressed using zlib.
+
+pytools py:module 0 reference.html#module-$ -
+pytools.DebugProcessLogger py:class 1 reference.html#$ -
+pytools.F py:class 1 reference.html#$ -
+pytools.ProcessLogger py:class 1 reference.html#$ -
+pytools.ProcessLogger.__enter__ py:method 1 reference.html#$ -
+pytools.ProcessLogger.__exit__ py:method 1 reference.html#$ -
+pytools.ProcessLogger.__init__ py:method 1 reference.html#$ -
+pytools.ProcessLogger.done py:method 1 reference.html#$ -
+pytools.ProcessTimer py:class 1 reference.html#$ -
+pytools.ProcessTimer.__enter__ py:method 1 reference.html#$ -
+pytools.ProcessTimer.__exit__ py:method 1 reference.html#$ -
+pytools.ProcessTimer.done py:method 1 reference.html#$ -
+pytools.ProcessTimer.process_elapsed py:attribute 1 reference.html#$ -
+pytools.ProcessTimer.wall_elapsed py:attribute 1 reference.html#$ -
+pytools.ProgressBar py:class 1 reference.html#$ -
+pytools.ProgressBar.__enter__ py:method 1 reference.html#$ -
+pytools.ProgressBar.__exit__ py:method 1 reference.html#$ -
+pytools.ProgressBar.draw py:method 1 reference.html#$ -
+pytools.ProgressBar.finished py:method 1 reference.html#$ -
+pytools.ProgressBar.progress py:method 1 reference.html#$ -
+pytools.ProgressBar.set_progress py:method 1 reference.html#$ -
+pytools.T py:class 1 reference.html#$ -
+pytools.Table py:class 1 reference.html#$ -
+pytools.Table.__str__ py:method 1 reference.html#$ -
+pytools.Table.add_row py:method 1 reference.html#$ -
+pytools.Table.github_markdown py:method 1 reference.html#$ -
+pytools.Table.latex py:method 1 reference.html#$ -
+pytools.UniqueNameGenerator py:class 1 reference.html#$ -
+pytools.UniqueNameGenerator.__call__ py:method 1 reference.html#$ -
+pytools.UniqueNameGenerator.add_name py:method 1 reference.html#$ -
+pytools.UniqueNameGenerator.add_names py:method 1 reference.html#$ -
+pytools.UniqueNameGenerator.is_name_conflicting py:method 1 reference.html#$ -
+pytools.all_roughly_equal py:function 1 reference.html#$ -
+pytools.argmax py:function 1 reference.html#$ -
+pytools.argmax2 py:function 1 reference.html#$ -
+pytools.argmin py:function 1 reference.html#$ -
+pytools.argmin2 py:function 1 reference.html#$ -
+pytools.cartesian_product py:function 1 reference.html#$ -
+pytools.codegen py:module 0 codegen.html#module-$ -
+pytools.codegen.CodeGenerator py:class 1 codegen.html#$ -
+pytools.codegen.CodeGenerator.__call__ py:method 1 codegen.html#$ -
+pytools.codegen.CodeGenerator.add_to_preamble py:method 1 codegen.html#$ -
+pytools.codegen.CodeGenerator.dedent py:method 1 codegen.html#$ -
+pytools.codegen.CodeGenerator.extend py:method 1 codegen.html#$ -
+pytools.codegen.CodeGenerator.get py:method 1 codegen.html#$ -
+pytools.codegen.CodeGenerator.indent py:method 1 codegen.html#$ -
+pytools.codegen.Indentation py:class 1 codegen.html#$ -
+pytools.codegen.Indentation.__enter__ py:method 1 codegen.html#$ -
+pytools.codegen.Indentation.__exit__ py:method 1 codegen.html#$ -
+pytools.codegen.Indentation.generator py:attribute 1 codegen.html#$ -
+pytools.codegen.remove_common_indentation py:function 1 codegen.html#$ -
+pytools.comb py:function 1 reference.html#$ -
+pytools.datatable py:module 0 reference.html#module-$ -
+pytools.datatable.DataTable py:class 1 reference.html#$ -
+pytools.datatable.DataTable.__init__ py:method 1 reference.html#$ -
+pytools.datatable.DataTable.copy py:method 1 reference.html#$ -
+pytools.datatable.DataTable.deep_copy py:method 1 reference.html#$ -
+pytools.datatable.DataTable.join py:method 1 reference.html#$ -
+pytools.deprecate_keyword py:function 1 reference.html#$ -
+pytools.distinct_pairs py:function 1 reference.html#$ -
+pytools.download_from_web_if_not_present py:function 1 reference.html#$ -
+pytools.generate_all_integer_tuples_below py:function 1 reference.html#$ -
+pytools.generate_nonnegative_integer_tuples_below py:function 1 reference.html#$ -
+pytools.generate_nonnegative_integer_tuples_summing_to_at_most py:function 1 reference.html#$ -
+pytools.generate_numbered_unique_names py:function 1 reference.html#$ -
+pytools.generate_permutations py:function 1 reference.html#$ -
+pytools.generate_unique_names py:function 1 reference.html#$ -
+pytools.generate_unique_permutations py:function 1 reference.html#$ -
+pytools.graph py:module 0 graph.html#module-$ -
+pytools.graph.CycleError py:class 1 graph.html#$ -
+pytools.graph.T py:class 1 graph.html#$ -
+pytools.graph.a_star py:function 1 graph.html#$ -
+pytools.graph.compute_induced_subgraph py:function 1 graph.html#$ -
+pytools.graph.compute_sccs py:function 1 graph.html#$ -
+pytools.graph.compute_topological_order py:function 1 graph.html#$ -
+pytools.graph.compute_transitive_closure py:function 1 graph.html#$ -
+pytools.graph.contains_cycle py:function 1 graph.html#$ -
+pytools.invoke_editor py:function 1 reference.html#$ -
+pytools.is_single_valued py:function 1 reference.html#$ -
+pytools.keyed_memoize_in py:function 1 reference.html#$ -
+pytools.keyed_memoize_method py:function 1 reference.html#$ -
+pytools.keyed_memoize_on_first_arg py:function 1 reference.html#$ -
+pytools.levi_civita py:function 1 reference.html#$ -
+pytools.log_process py:class 1 reference.html#$ -
+pytools.memoize py:function 1 reference.html#$ -
+pytools.memoize_in py:function 1 reference.html#$ -
+pytools.memoize_method py:function 1 reference.html#$ -
+pytools.memoize_on_first_arg py:function 1 reference.html#$ -
+pytools.natorder py:function 1 reference.html#$ -
+pytools.natsorted py:function 1 reference.html#$ -
+pytools.obj_array py:module 0 obj_array.html#module-$ -
+pytools.obj_array.flat_obj_array py:function 1 obj_array.html#$ -
+pytools.obj_array.make_obj_array py:function 1 obj_array.html#$ -
+pytools.obj_array.obj_array_imag py:function 1 obj_array.html#$ -
+pytools.obj_array.obj_array_imag_copy py:function 1 obj_array.html#$ -
+pytools.obj_array.obj_array_real py:function 1 obj_array.html#$ -
+pytools.obj_array.obj_array_real_copy py:function 1 obj_array.html#$ -
+pytools.obj_array.obj_array_vectorize py:function 1 obj_array.html#$ -
+pytools.obj_array.obj_array_vectorize_n_args py:function 1 obj_array.html#$ -
+pytools.one py:function 1 reference.html#$ -
+pytools.perm py:function 1 reference.html#$ -
+pytools.persistent_dict py:module 0 persistent_dict.html#module-$ -
+pytools.persistent_dict.CollisionWarning py:exception 1 persistent_dict.html#$ -
+pytools.persistent_dict.KeyBuilder py:class 1 persistent_dict.html#$ -
+pytools.persistent_dict.KeyBuilder.__call__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.KeyBuilder.new_hash py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.KeyBuilder.rec py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.NoSuchEntryError py:exception 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict py:class 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.__delitem__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.__getitem__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.__init__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.__setitem__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.clear py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.fetch py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.remove py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.store py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.PersistentDict.store_if_not_present py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.ReadOnlyEntryError py:exception 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict py:class 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict.__getitem__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict.__init__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict.__setitem__ py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict.clear py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict.fetch py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict.store py:method 1 persistent_dict.html#$ -
+pytools.persistent_dict.WriteOncePersistentDict.store_if_not_present py:method 1 persistent_dict.html#$ -
+pytools.reshaped_view py:function 1 reference.html#$ -
+pytools.resolve_name py:function 1 reference.html#$ -
+pytools.single_valued py:function 1 reference.html#$ -
+pytools.string_histogram py:function 1 reference.html#$ -
+pytools.tag py:module 0 tag.html#module-$ -
+pytools.tag.DottedName py:class 1 tag.html#$ -
+pytools.tag.DottedName.from_class py:method 1 tag.html#$ -
+pytools.tag.DottedName.name_parts py:attribute 1 tag.html#$ -
+pytools.tag.NonUniqueTagError py:class 1 tag.html#$ -
+pytools.tag.T_co py:class 1 tag.html#$ -
+pytools.tag.Tag py:class 1 tag.html#$ -
+pytools.tag.Tag.__repr__ py:method 1 tag.html#$ -
+pytools.tag.Tag.tag_name py:attribute 1 tag.html#$ -
+pytools.tag.Taggable py:class 1 tag.html#$ -
+pytools.tag.Taggable.__init__ py:method 1 tag.html#$ -
+pytools.tag.Taggable.copy py:method 1 tag.html#$ -
+pytools.tag.Taggable.tagged py:method 1 tag.html#$ -
+pytools.tag.Taggable.tags py:attribute 1 tag.html#$ -
+pytools.tag.Taggable.tags_of_type py:method 1 tag.html#$ -
+pytools.tag.Taggable.without_tags py:method 1 tag.html#$ -
+pytools.tag.UniqueTag py:class 1 tag.html#$ -
+pytools.tag.check_tag_uniqueness py:function 1 tag.html#$ -
+pytools.typedump py:function 1 reference.html#$ -
+pytools.unordered_hash py:function 1 reference.html#$ -
+pytools.wandering_element py:function 1 reference.html#$ -
+pytools.word_wrap py:function 1 reference.html#$ -
+codegen std:doc -1 codegen.html Tools for Source Code Generation
genindex std:label -1 genindex.html Index
-index std:doc -1 index.html Welcome to xPore’s documentation!
-installation std:doc -1 installation.html Installation
-installation std:label -1 installation.html#$ Installation
+graph std:doc -1 graph.html Graph Algorithms
+index std:doc -1 index.html Welcome to pytools’s documentation!
+license std:label -1 misc.html#$ License
+misc std:doc -1 misc.html Installation
modindex std:label -1 py-modindex.html Module Index
-outputtable std:doc -1 outputtable.html Output table description
-outputtable std:label -1 outputtable.html#$ Output table description
-preparation std:doc -1 preparation.html Data preparation from raw reads
-preparation std:label -1 preparation.html#$ Data preparation from raw reads
+obj_array std:doc -1 obj_array.html Handling numpy Object Arrays
+persistent_dict std:doc -1 persistent_dict.html Persistent Hashing and Persistent Dictionaries
py-modindex std:label -1 py-modindex.html Python Module Index
-quickstart std:doc -1 quickstart.html Quickstart - Detection of differential RNA modifications
-quickstart std:label -1 quickstart.html#$ Quickstart - Detection of differential RNA modifications
-scripts std:doc -1 scripts.html Scripts
-scripts std:label -1 scripts.html#$ Scripts
+reference std:doc -1 reference.html A Collection of Utilities
search std:label -1 search.html Search Page
+tag std:doc -1 tag.html Tag Interface
|