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FROM debian:wheezy
MAINTAINER Pierre Peterlongo pierre.peterlongo@inria.fr
# Set discoSnp++ version
ENV MTG_VERSION 2.2.10
# Set noninteratve mode
ENV DEBIAN_FRONTEND noninteractive
ENV PACKAGES wget gcc g++ make cmake zlib1g-dev libboost-dev git
ENV DIR /opt
ENV SOURCEKS kissnp2
ENV BUILD build
WORKDIR ${DIR}
RUN apt-get update -y && \
apt-get install -y --no-install-recommends ${PACKAGES}
RUN git config --global http.sslVerify false
# clone the github repo
RUN git clone --recursive https://github.com/GATB/DiscoSnp.git
WORKDIR ${DIR}/${SOURCE}
RUN git submodule init
# Using an official release
RUN git checkout v${MTG_VERSION}
RUN git submodule update
RUN mkdir ${BUILD}
WORKDIR ${DIR}/${SOURCE}/${BUILD}
RUN cmake ..
RUN make
# symlink binary in /usr/local/bin
RUN ln -s ${DIR}/${SOURCE}/${BUILD}/bin/kissnp2 /usr/local/bin
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