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Source: discosnp
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 12~),
dh-python,
python3,
cmake,
libgatbcore-dev (>= 1.4.1+git20180206.6f8fce8~),
libboost-dev,
libhdf5-dev,
zlib1g-dev
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/discosnp
Vcs-Git: https://salsa.debian.org/med-team/discosnp.git
Homepage: http://colibread.inria.fr/discosnp/
Package: discosnp
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends},
${python3:Depends},
python3,
gatb-core
Description: discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide
Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
Sequencers (NGS).
.
Note that number of input read sets is not constrained, it can be one, two,
or more. Note also that no other data as reference genome or annotations
are needed.
.
The software is composed by two modules. First module, kissnp2, detects SNPs
from read sets. A second module, kissreads, enhance the kissnp2 results by
computing per read set and for each found SNP:
.
1) its mean read coverage
2) the (phred) quality of reads generating the polymorphism.
.
This program is superseded by DiscoSnp++.
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