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#!/bin/bash
set -e
pkg="dnapi"
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
gunzip -r *
function compare_ref()
{
# $1: Test number
# $2, $3: values to be compared
echo "I: Test $1"
if [ "$2" = "$3" ]
then
echo "PASSED!"
else
echo "$2 is not equal to $3"
exit 1
fi
}
compare_ref 1 $(dnapi.py good.fq) TGGAATTCTCGG
compare_ref 2 $(dnapi.py -k 8:11:1 -r 1.1:1.4:0.1 good.fq) TGGAATTCTCGG
compare_ref 3 $(dnapi.py --show-all poor.fq | md5sum | awk '{print $1}') 1e4d27f27c0e2bb3ea80871105748d45
compare_ref 4 $(dnapi.py -k 9 -r 1.4 good.fq) TGGAATTCTCGGGTGCCAAGGAACTCC
echo "Testing python counterpart ..."
python3 -m pytest -v simple_test.py
echo "PASSED!"
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