1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
|
Description: Update .out files
Author: Nilesh Patra <nilesh@iki.fi>
Forwarded: not-needed, this is due to a fall-out with not updating test files with new upstream release
Last-Update: 2025-11-26
--- a/debian-tests-data/merge-tests.out
+++ b/debian-tests-data/merge-tests.out
@@ -13,6 +13,7 @@
LAST options:
-P P number of parallel threads (default=1)
+ -u RY use ~1 per this many initial matches
-W W use minimum positions in length-W windows (default=19)
-m M max initial matches per query position (default=5)
-z Z max gap length (default=30)
--- a/debian-tests-data/tests.out
+++ b/debian-tests-data/tests.out
@@ -22,8 +22,10 @@
-m PROB, --max-mismap=PROB
discard any alignment with mismap probability > PROB
(default=1.0)
+ --insert=NAME find insertions of the sequence with this name
--shrink shrink the output
-v, --verbose show progress messages
+ -w W, --width=W line-wrap width of group summary lines (default=79)
TEST dnarrange alns.maf
# dnarrange alns.maf
|
