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"""Numpydoc-style docstring parsing.
:see: https://numpydoc.readthedocs.io/en/latest/format.html
"""
import inspect
import itertools
import re
import typing as T
from textwrap import dedent
from .common import (
Docstring,
DocstringDeprecated,
DocstringExample,
DocstringMeta,
DocstringParam,
DocstringRaises,
DocstringReturns,
DocstringStyle,
RenderingStyle,
)
def _pairwise(iterable: T.Iterable, end=None) -> T.Iterable:
left, right = itertools.tee(iterable)
next(right, None)
return itertools.zip_longest(left, right, fillvalue=end)
def _clean_str(string: str) -> T.Optional[str]:
string = string.strip()
if len(string) > 0:
return string
return None
KV_REGEX = re.compile(r"^[^\s].*$", flags=re.M)
PARAM_KEY_REGEX = re.compile(r"^(?P<name>.*?)(?:\s*:\s*(?P<type>.*?))?$")
PARAM_OPTIONAL_REGEX = re.compile(r"(?P<type>.*?)(?:, optional|\(optional\))$")
# numpydoc format has no formal grammar for this,
# but we can make some educated guesses...
PARAM_DEFAULT_REGEX = re.compile(
r"(?<!\S)[Dd]efault(?: is | = |: |s to |)\s*(?P<value>[\w\-\.]*\w)"
)
RETURN_KEY_REGEX = re.compile(r"^(?:(?P<name>.*?)\s*:\s*)?(?P<type>.*?)$")
class Section:
"""Numpydoc section parser.
:param title: section title. For most sections, this is a heading like
"Parameters" which appears on its own line, underlined by
en-dashes ('-') on the following line.
:param key: meta key string. In the parsed ``DocstringMeta`` instance this
will be the first element of the ``args`` attribute list.
"""
def __init__(self, title: str, key: str) -> None:
self.title = title
self.key = key
@property
def title_pattern(self) -> str:
"""Regular expression pattern matching this section's header.
This pattern will match this instance's ``title`` attribute in
an anonymous group.
"""
dashes = "-" * len(self.title)
return rf"^({self.title})\s*?\n{dashes}\s*$"
def parse(self, text: str) -> T.Iterable[DocstringMeta]:
"""Parse ``DocstringMeta`` objects from the body of this section.
:param text: section body text. Should be cleaned with
``inspect.cleandoc`` before parsing.
"""
yield DocstringMeta([self.key], description=_clean_str(text))
class _KVSection(Section):
"""Base parser for numpydoc sections with key-value syntax.
E.g. sections that look like this:
key
value
key2 : type
values can also span...
... multiple lines
"""
def _parse_item(self, key: str, value: str) -> DocstringMeta:
pass
def parse(self, text: str) -> T.Iterable[DocstringMeta]:
for match, next_match in _pairwise(KV_REGEX.finditer(text)):
start = match.end()
end = next_match.start() if next_match is not None else None
value = text[start:end]
yield self._parse_item(
key=match.group(), value=inspect.cleandoc(value)
)
class _SphinxSection(Section):
"""Base parser for numpydoc sections with sphinx-style syntax.
E.g. sections that look like this:
.. title:: something
possibly over multiple lines
"""
@property
def title_pattern(self) -> str:
return rf"^\.\.\s*({self.title})\s*::"
class ParamSection(_KVSection):
"""Parser for numpydoc parameter sections.
E.g. any section that looks like this:
arg_name
arg_description
arg_2 : type, optional
descriptions can also span...
... multiple lines
"""
def _parse_item(self, key: str, value: str) -> DocstringParam:
match = PARAM_KEY_REGEX.match(key)
arg_name = type_name = is_optional = None
if match is not None:
arg_name = match.group("name")
type_name = match.group("type")
if type_name is not None:
optional_match = PARAM_OPTIONAL_REGEX.match(type_name)
if optional_match is not None:
type_name = optional_match.group("type")
is_optional = True
else:
is_optional = False
default = None
if len(value) > 0:
default_match = PARAM_DEFAULT_REGEX.search(value)
if default_match is not None:
default = default_match.group("value")
return DocstringParam(
args=[self.key, arg_name],
description=_clean_str(value),
arg_name=arg_name,
type_name=type_name,
is_optional=is_optional,
default=default,
)
class RaisesSection(_KVSection):
"""Parser for numpydoc raises sections.
E.g. any section that looks like this:
ValueError
A description of what might raise ValueError
"""
def _parse_item(self, key: str, value: str) -> DocstringRaises:
return DocstringRaises(
args=[self.key, key],
description=_clean_str(value),
type_name=key if len(key) > 0 else None,
)
class ReturnsSection(_KVSection):
"""Parser for numpydoc returns sections.
E.g. any section that looks like this:
return_name : type
A description of this returned value
another_type
Return names are optional, types are required
"""
is_generator = False
def _parse_item(self, key: str, value: str) -> DocstringReturns:
match = RETURN_KEY_REGEX.match(key)
if match is not None:
return_name = match.group("name")
type_name = match.group("type")
else:
return_name = None
type_name = None
return DocstringReturns(
args=[self.key],
description=_clean_str(value),
type_name=type_name,
is_generator=self.is_generator,
return_name=return_name,
)
class YieldsSection(ReturnsSection):
"""Parser for numpydoc generator "yields" sections."""
is_generator = True
class DeprecationSection(_SphinxSection):
"""Parser for numpydoc "deprecation warning" sections."""
def parse(self, text: str) -> T.Iterable[DocstringDeprecated]:
version, desc, *_ = text.split(sep="\n", maxsplit=1) + [None, None]
if desc is not None:
desc = _clean_str(inspect.cleandoc(desc))
yield DocstringDeprecated(
args=[self.key], description=desc, version=_clean_str(version)
)
class ExamplesSection(Section):
"""Parser for numpydoc examples sections.
E.g. any section that looks like this:
>>> import numpy.matlib
>>> np.matlib.empty((2, 2)) # filled with random data
matrix([[ 6.76425276e-320, 9.79033856e-307], # random
[ 7.39337286e-309, 3.22135945e-309]])
>>> np.matlib.empty((2, 2), dtype=int)
matrix([[ 6600475, 0], # random
[ 6586976, 22740995]])
"""
def parse(self, text: str) -> T.Iterable[DocstringMeta]:
"""Parse ``DocstringExample`` objects from the body of this section.
:param text: section body text. Should be cleaned with
``inspect.cleandoc`` before parsing.
"""
lines = dedent(text).strip().splitlines()
while lines:
snippet_lines = []
description_lines = []
while lines:
if not lines[0].startswith(">>>"):
break
snippet_lines.append(lines.pop(0))
while lines:
if lines[0].startswith(">>>"):
break
description_lines.append(lines.pop(0))
yield DocstringExample(
[self.key],
snippet="\n".join(snippet_lines) if snippet_lines else None,
description="\n".join(description_lines),
)
DEFAULT_SECTIONS = [
ParamSection("Parameters", "param"),
ParamSection("Params", "param"),
ParamSection("Arguments", "param"),
ParamSection("Args", "param"),
ParamSection("Other Parameters", "other_param"),
ParamSection("Other Params", "other_param"),
ParamSection("Other Arguments", "other_param"),
ParamSection("Other Args", "other_param"),
ParamSection("Receives", "receives"),
ParamSection("Receive", "receives"),
RaisesSection("Raises", "raises"),
RaisesSection("Raise", "raises"),
RaisesSection("Warns", "warns"),
RaisesSection("Warn", "warns"),
ParamSection("Attributes", "attribute"),
ParamSection("Attribute", "attribute"),
ReturnsSection("Returns", "returns"),
ReturnsSection("Return", "returns"),
YieldsSection("Yields", "yields"),
YieldsSection("Yield", "yields"),
ExamplesSection("Examples", "examples"),
ExamplesSection("Example", "examples"),
Section("Warnings", "warnings"),
Section("Warning", "warnings"),
Section("See Also", "see_also"),
Section("Related", "see_also"),
Section("Notes", "notes"),
Section("Note", "notes"),
Section("References", "references"),
Section("Reference", "references"),
DeprecationSection("deprecated", "deprecation"),
]
class NumpydocParser:
"""Parser for numpydoc-style docstrings."""
def __init__(self, sections: T.Optional[T.Dict[str, Section]] = None):
"""Setup sections.
:param sections: Recognized sections or None to defaults.
"""
sections = sections or DEFAULT_SECTIONS
self.sections = {s.title: s for s in sections}
self._setup()
def _setup(self):
self.titles_re = re.compile(
r"|".join(s.title_pattern for s in self.sections.values()),
flags=re.M,
)
def add_section(self, section: Section):
"""Add or replace a section.
:param section: The new section.
"""
self.sections[section.title] = section
self._setup()
def parse(self, text: str) -> Docstring:
"""Parse the numpy-style docstring into its components.
:returns: parsed docstring
"""
ret = Docstring(style=DocstringStyle.NUMPYDOC)
if not text:
return ret
# Clean according to PEP-0257
text = inspect.cleandoc(text)
# Find first title and split on its position
match = self.titles_re.search(text)
if match:
desc_chunk = text[: match.start()]
meta_chunk = text[match.start() :]
else:
desc_chunk = text
meta_chunk = ""
# Break description into short and long parts
parts = desc_chunk.split("\n", 1)
ret.short_description = parts[0] or None
if len(parts) > 1:
long_desc_chunk = parts[1] or ""
ret.blank_after_short_description = long_desc_chunk.startswith(
"\n"
)
ret.blank_after_long_description = long_desc_chunk.endswith("\n\n")
ret.long_description = long_desc_chunk.strip() or None
for match, nextmatch in _pairwise(self.titles_re.finditer(meta_chunk)):
title = next(g for g in match.groups() if g is not None)
factory = self.sections[title]
# section chunk starts after the header,
# ends at the start of the next header
start = match.end()
end = nextmatch.start() if nextmatch is not None else None
ret.meta.extend(factory.parse(meta_chunk[start:end]))
return ret
def parse(text: str) -> Docstring:
"""Parse the numpy-style docstring into its components.
:returns: parsed docstring
"""
return NumpydocParser().parse(text)
def compose(
# pylint: disable=W0613
docstring: Docstring,
rendering_style: RenderingStyle = RenderingStyle.COMPACT,
indent: str = " ",
) -> str:
"""Render a parsed docstring into docstring text.
:param docstring: parsed docstring representation
:param rendering_style: the style to render docstrings
:param indent: the characters used as indentation in the docstring string
:returns: docstring text
"""
def process_one(
one: T.Union[DocstringParam, DocstringReturns, DocstringRaises]
):
if isinstance(one, DocstringParam):
head = one.arg_name
elif isinstance(one, DocstringReturns):
head = one.return_name
else:
head = None
if one.type_name and head:
head += f" : {one.type_name}"
elif one.type_name:
head = one.type_name
elif not head:
head = ""
if isinstance(one, DocstringParam) and one.is_optional:
head += ", optional"
if one.description:
body = f"\n{indent}".join([head] + one.description.splitlines())
parts.append(body)
else:
parts.append(head)
def process_sect(name: str, args: T.List[T.Any]):
if args:
parts.append("")
parts.append(name)
parts.append("-" * len(parts[-1]))
for arg in args:
process_one(arg)
parts: T.List[str] = []
if docstring.short_description:
parts.append(docstring.short_description)
if docstring.blank_after_short_description:
parts.append("")
if docstring.deprecation:
first = ".. deprecated::"
if docstring.deprecation.version:
first += f" {docstring.deprecation.version}"
if docstring.deprecation.description:
rest = docstring.deprecation.description.splitlines()
else:
rest = []
sep = f"\n{indent}"
parts.append(sep.join([first] + rest))
if docstring.long_description:
parts.append(docstring.long_description)
if docstring.blank_after_long_description:
parts.append("")
process_sect(
"Parameters",
[item for item in docstring.params or [] if item.args[0] == "param"],
)
process_sect(
"Attributes",
[
item
for item in docstring.params or []
if item.args[0] == "attribute"
],
)
process_sect(
"Returns",
[
item
for item in docstring.many_returns or []
if not item.is_generator
],
)
process_sect(
"Yields",
[item for item in docstring.many_returns or [] if item.is_generator],
)
if docstring.returns and not docstring.many_returns:
ret = docstring.returns
parts.append("Yields" if ret else "Returns")
parts.append("-" * len(parts[-1]))
process_one(ret)
process_sect(
"Receives",
[
item
for item in docstring.params or []
if item.args[0] == "receives"
],
)
process_sect(
"Other Parameters",
[
item
for item in docstring.params or []
if item.args[0] == "other_param"
],
)
process_sect(
"Raises",
[item for item in docstring.raises or [] if item.args[0] == "raises"],
)
process_sect(
"Warns",
[item for item in docstring.raises or [] if item.args[0] == "warns"],
)
for meta in docstring.meta:
if isinstance(
meta,
(
DocstringDeprecated,
DocstringParam,
DocstringReturns,
DocstringRaises,
),
):
continue # Already handled
parts.append("")
parts.append(meta.args[0].replace("_", "").title())
parts.append("-" * len(meta.args[0]))
if meta.description:
parts.append(meta.description)
return "\n".join(parts)
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