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"""Unit tests for the Cell class"""
# Copyright (C) 2013 Anders Logg
#
# This file is part of DOLFIN.
#
# DOLFIN is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# DOLFIN is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
import pytest
import numpy
from dolfin import *
from dolfin_utils.test import skip_in_parallel, skip_in_release
def test_unit_interval():
mesh = UnitIntervalMesh.create(MPI.comm_self, 1)
@skip_in_parallel
def test_distance_interval():
mesh = UnitIntervalMesh.create(1)
cell = Cell(mesh, 0)
assert round(cell.distance(Point(-1.0)) - 1.0, 7) == 0
assert round(cell.distance(Point(0.5)) - 0.0, 7) == 0
@skip_in_parallel
def test_distance_triangle():
mesh = UnitSquareMesh(1, 1)
cell = Cell(mesh, 1)
assert round(cell.distance(Point(-1.0, -1.0)) - numpy.sqrt(2), 7) == 0
assert round(cell.distance(Point(-1.0, 0.5)) - 1, 7) == 0
assert round(cell.distance(Point(0.5, 0.5)) - 0.0, 7) == 0
@skip_in_parallel
def test_distance_tetrahedron():
mesh = UnitCubeMesh(1, 1, 1)
cell = Cell(mesh, 5)
assert round(cell.distance(Point(-1.0, -1.0, -1.0))-numpy.sqrt(3), 7) == 0
assert round(cell.distance(Point(-1.0, 0.5, 0.5)) - 1, 7) == 0
assert round(cell.distance(Point(0.5, 0.5, 0.5)) - 0.0, 7) == 0
@skip_in_release
@skip_in_parallel
def test_issue_568():
mesh = UnitSquareMesh(4, 4)
cell = Cell(mesh, 0)
# Should throw an error, not just segfault (only works in DEBUG mode!)
with pytest.raises(RuntimeError):
cell.facet_area(0)
# Should work after initializing the connectivity
mesh.init(2, 1)
cell.facet_area(0)
def test_volume_quadrilateralR2():
mesh = UnitSquareMesh.create(MPI.comm_self, 1, 1, CellType.Type.quadrilateral)
cell = Cell(mesh, 0)
assert cell.volume() == 1.0
@pytest.mark.parametrize('coordinates', [[[0.0, 0.0, 0.0], [1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [1.0, 1.0, 0.0]],
[[0.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0], [0.0, 1.0, 1.0]]])
def test_volume_quadrilateralR3(coordinates):
mesh = Mesh()
editor = MeshEditor()
editor.open(mesh, "quadrilateral", 2, 3)
editor.init_vertices(4)
editor.init_cells(1)
editor.add_vertex(0, Point(numpy.array(coordinates[0])))
editor.add_vertex(1, Point(numpy.array(coordinates[1])))
editor.add_vertex(2, Point(numpy.array(coordinates[2])))
editor.add_vertex(3, Point(numpy.array(coordinates[3])))
editor.add_cell(0,numpy.array([0, 1, 2, 3],dtype=numpy.uintp))
editor.close()
mesh.init()
cell = Cell(mesh, 0)
assert cell.volume() == 1.0
@pytest.mark.parametrize('scaling', [1e0, 1e-5, 1e-10, 1e-15, 1e-20, 1e-30,
1e5, 1e10, 1e15, 1e20, 1e30])
def test_volume_quadrilateral_coplanarity_check_1(scaling):
with pytest.raises(RuntimeError) as error:
mesh = Mesh()
editor = MeshEditor()
editor.open(mesh, "quadrilateral", 2, 3)
editor.init_vertices(4)
editor.init_cells(1)
# Unit square cell scaled down by 'scaling' and the first vertex is distorted so that the vertices are clearly non coplanar
editor.add_vertex(0, Point(scaling, 0.5 * scaling, 0.6 * scaling))
editor.add_vertex(1, Point(0.0, scaling, 0.0))
editor.add_vertex(2, Point(0.0, 0.0, scaling))
editor.add_vertex(3, Point(0.0, scaling, scaling))
editor.add_cell(0,numpy.array([0, 1, 2, 3],dtype=numpy.uintp))
editor.close()
mesh.init()
cell = Cell(mesh, 0)
volume = cell.volume()
assert "are not coplanar" in str(error.value)
# Test when |p0-p3| is ~ 1 but |p1-p2| is small
# The cell is degenerate when scale is below 1e-17, it is expected to fail the test.
@pytest.mark.parametrize('scaling', [1e0, 1e-5, 1e-10, 1e-15])
def test_volume_quadrilateral_coplanarity_check_2(scaling):
with pytest.raises(RuntimeError) as error:
mesh = Mesh()
editor = MeshEditor()
editor.open(mesh, "quadrilateral", 2, 3)
editor.init_vertices(4)
editor.init_cells(1)
# Unit square cell scaled down by 'scaling' and the first vertex is distorted so that the vertices are clearly non coplanar
editor.add_vertex(0, Point(1.0, 0.5, 0.6))
editor.add_vertex(1, Point(0.0, scaling, 0.0))
editor.add_vertex(2, Point(0.0, 0.0, scaling))
editor.add_vertex(3, Point(0.0, 1.0, 1.0))
editor.add_cell(0,numpy.array([0, 1, 2, 3],dtype=numpy.uintp))
editor.close()
mesh.init()
cell = Cell(mesh, 0)
volume = cell.volume()
assert "are not coplanar" in str(error.value)
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