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#!/usr/bin/make -f
# DH_VERBOSE := 1
export LC_ALL=C.UTF-8
include /usr/share/dpkg/default.mk
# for hardening you might like to uncomment this:
# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
JAVA_HOME := /usr/lib/jvm/default-java
%:
dh $@ --with javahelper
override_dh_auto_configure:
dh_auto_configure
mkdir -p lib/test
ln -s /usr/share/java/commons-collections4.jar lib/commons-collections4.jar
ln -s /usr/share/java/biojava6-alignment.jar lib/biojava6-alignment.jar
ln -s /usr/share/java/biojava6-core.jar lib/biojava6-core.jar
ln -s /usr/share/java/commons-io.jar lib/commons-io.jar
ln -s /usr/share/java/commons-lang.jar lib/commons-lang.jar
ln -s /usr/share/java/commons-math3.jar lib/commons-math3.jar
ln -s /usr/share/java/htsjdk.jar lib/htsjdk.jar
ln -s /usr/share/java/la4j.jar lib/la4j.jar
ln -s /usr/share/java/picard.jar lib/picard.jar
ln -s /usr/share/java/snakeyaml.jar lib/snakeyaml.jar
ln -s /usr/share/java/testng.jar lib/test/testng.jar
ln -s /usr/share/java/junit4.jar lib/test/junit.jar
override_dh_auto_clean:
rm -Rf lib
override_dh_fixperms:
dh_fixperms
find debian/drop-seq-testdata/usr/share -type f -exec chmod -x \{\} \;
# Invoking dh_installman with --language=C to get "traditional" manpages
# although the files we put in /usr/bin end with ".sh".
override_dh_installman:
dh_installman --language=C
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