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# SPDX-FileCopyrightText: Copyright © DUNE Project contributors, see file LICENSE.md in module root
# SPDX-License-Identifier: LicenseRef-GPL-2.0-only-with-DUNE-exception
import os, inspect
from ..generator.generator import SimpleGenerator
from dune.common.hashit import hashIt
from dune.common import FieldVector
from dune.common.utility import isString
from dune.deprecate import deprecated
from dune.grid import gridFunction, DataType, Partitions
from dune.grid import OutputType
from dune.generator.algorithm import cppType
from dune.generator import builder
from dune.deprecate import deprecated
def getDimgrid(constructor):
dimgrid = None
if not dimgrid:
try:
dimgrid = constructor.dimgrid
except AttributeError:
pass
if not dimgrid:
try:
dimgrid = len(constructor["vertices"][0])
except KeyError:
pass
if not dimgrid:
raise ValueError("Couldn't extract dimension of grid from constructor arguments, added dimgrid parameter")
return dimgrid
def triangulation(grid, level=0, *, partition=Partitions.all):
if grid.dimGrid != 2:
raise Exception("Grid must be 2-dimensional for use as matplotlib triangulation.")
from matplotlib.tri import Triangulation
x, triangles = grid.tessellate(level, partition=partition)
if len(triangles) == 0: # no elements in this partition set
return None
return Triangulation(x[:,0], x[:,1], triangles)
_writeVTKDispatcher = []
def _writeVTK(vtk,grid,f,name,dataTag):
done = False
try:
f.addToVTKWriter(name, vtk, dataTag)
done = True
except AttributeError:
pass
if not done:
for dispatch in _writeVTKDispatcher:
try:
func = dispatch(grid,f)
except:
func = None
if func is not None:
func.addToVTKWriter(name,vtk,dataTag)
done = True
break
if not done:
gridFunction(grid)(f).addToVTKWriter(name, vtk, dataTag)
def writeVTK(grid, name,
celldata=None, pointdata=None,
cellvector=None, pointvector=None,
number=None, subsampling=None,outputType=OutputType.appendedraw,
write=True, nonconforming=False):
vtk = grid.vtkWriter(nonconforming) if subsampling is None else grid.vtkWriter(subsampling)
def addDataToVTKWriter(dataFunctions, dataName, dataTag):
if dataFunctions is None: return
if isinstance(dataFunctions, dict):
for n, f in dataFunctions.items():
if f is None: continue
_writeVTK(vtk,grid,f,n,dataTag)
elif isinstance(dataFunctions, list):
for f in dataFunctions:
if f is None: continue
try:
_writeVTK(vtk,grid,f,f.name,dataTag)
except AttributeError:
try:
_writeVTK(vtk,grid,f[0],f[1],dataTag)
except IndexError:
raise TypeError("""
Did you try to pass in a function without a name attribute?
Try using a dictionary with name:function instead.""")
elif dataFunctions is not None:
raise TypeError("Argument '" + dataName + "' must be a dict or list instance.")
addDataToVTKWriter(celldata, 'celldata', DataType.CellData)
addDataToVTKWriter(pointdata, 'pointdata', DataType.PointData)
addDataToVTKWriter(cellvector, 'cellvector', DataType.CellVector)
addDataToVTKWriter(pointvector, 'pointvector', DataType.PointVector)
assert isinstance(outputType,OutputType)
if write:
if number is None:
vtk.write(name, outputType)
else:
vtk.write(name, number, outputType)
else:
return vtk
class SequencedVTK:
def __init__(self, grid, name, number,
celldata, pointdata, cellvector, pointvector,
subsampling, outputType=OutputType.appendedraw):
self.number = number
self.name = name
self.vtk = grid.writeVTK(name,celldata=celldata,pointdata=pointdata,cellvector=cellvector,pointvector=pointvector,subsampling=subsampling,write=False)
self.outputType = outputType
def __call__(self):
self.vtk.write(self.name, self.number, self.outputType)
self.number += 1
def sequencedVTK(grid, name, celldata=None, pointdata=None, cellvector=None, pointvector=None,
number=0, subsampling=None, outputType=OutputType.appendedraw):
return SequencedVTK(grid,name,number,
celldata=celldata,pointdata=pointdata,
cellvector=cellvector,pointvector=pointvector,
subsampling=subsampling,outputType=outputType)
def plot(self, function=None, *args, **kwargs):
import dune.plotting
if not function:
dune.plotting.plotGrid(self, *args, **kwargs)
else:
if not hasattr(function,"grid"):
function = self.function(function)
dune.plotting.plot(solution=function,*args,**kwargs)
isGenerator = SimpleGenerator("GridViewIndexSet", "Dune::Python")
def indexSet(gv):
try:
return gv._indexSet
except TypeError:
includes = gv.cppIncludes + ["dune/python/grid/indexset.hh"]
typeName = gv.cppTypeName+"::IndexSet"
moduleName = "indexset_" + hashIt(typeName)
module = isGenerator.load(includes, typeName, moduleName)
return gv._indexSet
mcmgGenerator = SimpleGenerator("MultipleCodimMultipleGeomTypeMapper", "Dune::Python")
def mapper(gv,layout):
includes = gv.cppIncludes + ["dune/python/grid/mapper.hh"]
typeName = "Dune::MultipleCodimMultipleGeomTypeMapper< "+gv.cppTypeName+" >"
moduleName = "mcmgmapper_" + hashIt(typeName)
module = mcmgGenerator.load(includes, typeName, moduleName)
return gv._mapper(layout)
import functools
def gfPlot(gf, *args, **kwargs):
gf.gridView.plot(gf,*args,**kwargs)
def callbackFunction(callback_,e,x):
return callback_(e.geometry.toGlobal(x))
def function(gv,callback,includeFiles=None,*args,name=None,order=None,dimRange=None):
if name is None:
name = "tmp"+str(gv._gfCounter)
gv.__class__._gfCounter += 1
if isString(callback):
if includeFiles is None:
raise ValueError("""if `callback` is the name of a C++ function
then at least one include file containing that function must be
provided""")
# unique header guard is added further down
source = '#include <config.h>\n\n'
source += '#define USING_DUNE_PYTHON 1\n\n'
includes = []
if isString(includeFiles):
if not os.path.dirname(includeFiles):
with open(includeFiles, "r") as include:
source += include.read()
source += "\n"
else:
source += "#include <"+includeFiles+">\n"
includes += [includeFiles]
elif hasattr(includeFiles,"readable"): # for IOString
with includeFiles as include:
source += include.read()
source += "\n"
elif isinstance(includeFiles, list):
for includefile in includeFiles:
if not os.path.dirname(includefile):
with open(includefile, "r") as include:
source += include.read()
source += "\n"
else:
source += "#include <"+includefile+">\n"
includes += [includefile]
includes += gv.cppIncludes
argTypes = []
for arg in args:
t,i = cppType(arg)
argTypes.append(t)
includes += i
signature = callback + "( " + ", ".join(argTypes) + " )"
moduleName = "gf_" + hashIt(signature) + "_" + hashIt(source)
# add unique header guard with moduleName
source = '#ifndef Guard_'+moduleName+'\n' + \
'#define Guard_'+moduleName+'\n\n' + \
source
includes = sorted(set(includes))
source += "".join(["#include <" + i + ">\n" for i in includes])
source += "\n"
source += '#include <dune/python/grid/function.hh>\n'
source += '#include <dune/python/pybind11/pybind11.h>\n'
source += '\n'
source += "PYBIND11_MODULE( " + moduleName + ", module )\n"
source += "{\n"
source += " module.def( \"gf\", [module] ( "+gv.cppTypeName + " &gv"+"".join([", "+argTypes[i] + " arg" + str(i) for i in range(len(argTypes))]) + " ) {\n"
source += " auto callback="+callback+"<"+gv.cppTypeName+">( "+",".join(["arg"+str(i) for i in range(len(argTypes))]) +"); \n"
source += " return Dune::Python::registerGridFunction<"+gv.cppTypeName+",decltype(callback)>(module,pybind11::cast(gv),\"tmp\",callback);\n"
source += " },"
source += " "+",".join(["pybind11::keep_alive<0,"+str(i+1)+">()" for i in range(len(argTypes)+1)])
source += ");\n"
source += "}\n"
source += "#endif\n"
gf = builder.load(moduleName, source, signature).gf(gv,*args)
else:
if len(inspect.signature(callback).parameters) == 1: # global function, turn into a local function
callback_ = callback
# callback = lambda e,x: callback_(e.geometry.toGlobal(x))
callback = functools.partial(callbackFunction, callback_)
else:
callback_ = None
if dimRange is None:
# if no `dimRange` attribute is set on the callback,
# try to evaluate the function to determine the dimension of
# the return value. This can fail if the function is singular in
# the computational domain in which case an exception is raised
e = gv.elements.__iter__().__next__()
try:
y = callback(e,e.referenceElement.position(0,0))
except ArithmeticError:
try:
y = callback(e,e.referenceElement.position(0,2))
except ArithmeticError:
raise TypeError("Cannot determine dimension of range of "+
"given grid function due to arithmetic exceptions being "+
"raised. Add a `dimRange` parameter to the grid function to "+
"solve this issue - set `dimRange`=0 for a scalar function.")
try:
dimRange = len(y)
except TypeError:
dimRange = 0
if dimRange > 0:
scalar = "false"
else:
scalar = "true"
FieldVector(dimRange*[0]) # register FieldVector for the return value
if not dimRange in gv.__class__._functions.keys():
# unique header key is added further down
source = '#include <config.h>\n\n'
source += '#define USING_DUNE_PYTHON 1\n\n'
includes = gv.cppIncludes
signature = gv.cppTypeName+"::gf<"+str(dimRange)+">"
moduleName = "gf_" + hashIt(signature) + "_" + hashIt(source)
# add unique header guard with moduleName
source = '#ifndef Guard_'+moduleName+'\n' + \
'#define Guard_'+moduleName+'\n\n' + \
source
includes = sorted(set(includes))
source += "".join(["#include <" + i + ">\n" for i in includes])
source += "\n"
source += '#include <dune/python/grid/function.hh>\n'
source += '#include <dune/python/pybind11/pybind11.h>\n'
source += '\n'
source += "PYBIND11_MODULE( " + moduleName + ", module )\n"
source += "{\n"
source += " typedef pybind11::function Evaluate;\n";
source += " Dune::Python::registerGridFunction< "+gv.cppTypeName+", Evaluate, "+str(dimRange)+" >( module, \"gf\", "+scalar+" );\n"
source += "}\n"
source += "#endif\n"
gfModule = builder.load(moduleName, source, signature)
gfFunc = getattr(gfModule,"gf"+str(dimRange))
"""
if callback_ is not None:
gfFunc.localCall = gfFunc.__call__
gfFunc.globalCall = lambda self,x: callback_(x)
feval = lambda self,e,x=None: self.globalCall(e) if x is None else self.localCall(e,x)
subclass = type(gfFunc.__name__, (gfFunc,), {"__call__": feval})
gv.__class__._functions[dimRange] = subclass
else:
gv.__class__._functions[dimRange] = gfFunc
"""
gfFunc._localCall = gfFunc.__call__
def gfCall(self,e,x=None):
if x is None:
if not hasattr(self,"_globalCall"):
raise AttributeError("this grid function can not be called with a global coordinate")
return self._globalCall(e)
else:
return self._localCall(e,x)
gfFunc.__call__ = gfCall
gv.__class__._functions[dimRange] = gfFunc
gf = gv.__class__._functions[dimRange](gv,callback)
if callback_ is not None: # allow to still call with only global coordinate
gf._globalCall = callback_
gf.plot = functools.partial(gfPlot, gf)
gf.name = name
gf.order = order
return gf
def addAttr(module, cls):
setattr(cls, "_module", module)
setattr(cls, "writeVTK", writeVTK)
setattr(cls, "sequencedVTK", sequencedVTK)
setattr(cls, "_functions", {})
@deprecated(name="dune.grid.GridView.tesselate", msg="Use 'tessellate' (note spelling)")
def tesselate(gv, *args,**kwargs):
return gv.tessellate(*args,**kwargs)
setattr(cls,"tesselate", tesselate)
[[deprecated("use 'tessellate' (note spelling)")]]
if cls.dimension == 2:
setattr(cls, "plot", plot)
setattr(cls, "triangulation", triangulation)
else:
def throwFunc(msg):
def throw(*args, **kwargs):
raise AttributeError(msg)
return throw
setattr(cls, "plot", throwFunc("plot(...) only implemented on 2D grids"))
setattr(cls, "triangulation", throwFunc("triangulation(...) only implemented on 2d grid"))
cls.indexSet = property(indexSet)
setattr(cls,"mapper",mapper)
setattr(cls,"function",function)
setattr(cls,"_gfCounter",0)
def addHAttr(module):
# register reference element for this grid
import dune.geometry
for d in range(module.LeafGrid.dimension+1):
dune.geometry.module(d)
setattr(module.HierarchicalGrid,"levelView",levelView)
setattr(module.HierarchicalGrid,"persistentContainer",persistentContainer)
gvGenerator = SimpleGenerator("GridView", "Dune::Python")
def viewModule(includes, typeName, *args, **kwargs):
includes = includes + ["dune/python/grid/gridview.hh"]
moduleName = "view_" + hashIt(typeName)
module = gvGenerator.load(includes, typeName, moduleName, *args, **kwargs)
return module
def levelView(hgrid,level):
includes = hgrid.cppIncludes
typeName = "typename "+hgrid.cppTypeName+"::LevelGridView"
viewModule(includes, typeName)
return hgrid._levelView(level)
pcGenerator = SimpleGenerator("PersistentContainer", "Dune::Python")
def persistentContainer(hgrid,codim,dimension):
includes = hgrid.cppIncludes + ["dune/python/grid/persistentcontainer.hh"]
typeName = "Dune::PersistentContainer<"+hgrid.cppTypeName+", Dune::FieldVector<double,"+str(dimension)+">>"
moduleName = "persistentcontainer_" + hashIt(typeName)
module = pcGenerator.load(includes, typeName, moduleName)
return module.PersistentContainer(hgrid,codim)
def module(includes, typeName, *args, **kwargs):
try:
generator = kwargs.pop("generator")
except KeyError:
generator = SimpleGenerator("HierarchicalGrid", "Dune::Python")
includes = includes + ["dune/python/grid/hierarchical.hh"]
typeHash = "hierarchicalgrid_" + hashIt(typeName)
kwargs["dynamicAttr"] = True
kwargs["holder"] = "std::shared_ptr"
module = generator.load(includes, typeName, typeHash, *args, **kwargs)
return module
if __name__ == "__main__":
import doctest
doctest.testmod(optionflags=doctest.ELLIPSIS)
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