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// SPDX-FileCopyrightText: Copyright © DUNE Project contributors, see file LICENSE.md in module root
// SPDX-License-Identifier: LicenseRef-GPL-2.0-only-with-DUNE-exception
// -*- tab-width: 2; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=4 sw=2 sts=2:
#ifndef DUNE_PYTHON_GRID_GEOMETRY_HH
#define DUNE_PYTHON_GRID_GEOMETRY_HH
#include <cstddef>
#include <array>
#include <string>
#include <type_traits>
#include <utility>
#include <dune/common/fmatrix.hh>
#include <dune/common/fvector.hh>
#include <dune/common/rangeutilities.hh>
#include <dune/common/visibility.hh>
#include <dune/python/common/fvecmatregistry.hh>
#include <dune/geometry/referenceelements.hh>
#include <dune/python/common/vector.hh>
#include <dune/python/pybind11/pybind11.h>
#include <dune/python/pybind11/numpy.h>
namespace Dune
{
namespace Python
{
namespace detail
{
// registerGridGeometry
// --------------------
template< class Geometry, class Array >
inline static pybind11::array_t< double >
pushForwardGradients ( const Geometry &geo, Array xVec, pybind11::array_t< double > gVec )
{
typedef typename Geometry::LocalCoordinate LocalCoordinate;
typedef typename Geometry::GlobalCoordinate GlobalCoordinate;
// x = (localCoord,nofQuad)
auto x = xVec.unchecked();
// g = (dimRange,localCoord,nofQuad)
auto g = gVec.unchecked();
// ret = (dimRange,globalCoord,nofQuad)
pybind11::array_t< double > ret( std::array< ssize_t, 3 >{{ g.shape( 0 ), static_cast< ssize_t >( Geometry::GlobalCoordinate::size() ), g.shape( 2 ) }} );
auto y = ret.template mutable_unchecked< 3 >();
if( x.shape( 1 ) != g.shape( 2 ) )
std::cout << x.shape( 1 ) << " " << g.shape( 2 ) << std::endl;
if( x.shape( 0 ) != ssize_t(LocalCoordinate::size()) )
std::cout << x.shape( 0 ) << " " << Geometry::LocalCoordinate::size() << std::endl;
for( ssize_t p = 0; p < g.shape( 2 ); ++p )
{
LocalCoordinate xLocal;
for( std::size_t l = 0; l < LocalCoordinate::size(); ++l )
xLocal[ l ] = x( l, p );
const auto jit = geo.jacobianInverseTransposed( xLocal );
for( ssize_t range = 0; range < g.shape( 0 ); ++range )
{
// Performance Issue:
// The copies gradLocal and gradGlobal can be avoided by providing
// a DenseVector implementation based on a single axis of the
// pybind11::array accessor, because the `jit.mv` method is required
// to take arbitrary implementations of the dense vector interface.
LocalCoordinate gradLocal;
for( std::size_t l = 0; l < LocalCoordinate::size(); ++l )
gradLocal[ l ] = g(range, l, p );
GlobalCoordinate gradGlobal;
jit.mv( gradLocal, gradGlobal );
for( std::size_t r = 0; r < GlobalCoordinate::size(); ++r )
y( range, r, p ) = gradGlobal[ r ];
}
}
return ret;
}
template< class Geometry, class... options >
void registerGridGeometry ( pybind11::handle scope, pybind11::class_<Geometry, options...> cls )
{
const int mydimension = Geometry::mydimension;
const int coorddimension = Geometry::coorddimension;
typedef typename Geometry::ctype ctype;
typedef FieldVector< ctype, mydimension > LocalCoordinate;
typedef FieldVector< ctype, coorddimension > GlobalCoordinate;
typedef FieldMatrix< ctype, coorddimension, mydimension > Jacobian;
typedef FieldMatrix< ctype, mydimension, coorddimension > JacobianTransposed;
typedef FieldMatrix< ctype, mydimension, coorddimension > JacobianInverse;
typedef FieldMatrix< ctype, coorddimension, mydimension > JacobianInverseTransposed;
registerFieldVecMat<LocalCoordinate>::apply();
registerFieldVecMat<GlobalCoordinate>::apply();
registerFieldVecMat<Jacobian>::apply();
registerFieldVecMat<JacobianTransposed>::apply();
registerFieldVecMat<JacobianInverse>::apply();
registerFieldVecMat<JacobianInverseTransposed>::apply();
typedef pybind11::array_t< ctype > Array;
using pybind11::operator""_a;
pybind11::options opts;
opts.disable_function_signatures();
cls.doc() = R"doc(
A geometry describes a map from the reference domain into a
Euclidean space, where the reference domain is given by the
reference element.
The mapping is required to be one-to-one.
We refer to points within the reference domain as "local" points.
The image of a local point is called its (global) position.
Note: The image of the mapping may be a submanifold of the
Euclidean space.
)doc";
cls.def( "corner", [] ( const Geometry &self, int i ) {
const int size = self.corners();
if( (i < 0) || (i >= size) )
throw pybind11::value_error( "Invalid index: " + std::to_string( i ) + " (must be in [0, " + std::to_string( size ) + "))." );
return self.corner( i );
}, "index"_a,
R"doc(
get global position a reference corner
Args:
index: index of the reference corner
Returns:
global position of the reference corner
Note: If the argument "index" is omitted, this method returns a
NumPy array containing the global position of all corners.
This version may be used to vectorize the code.
)doc" );
cls.def( "corner", [] ( const Geometry &self ) {
const int size = self.corners();
pybind11::array_t< ctype > cornersArray( { static_cast< ssize_t >( coorddimension ), static_cast< ssize_t >( size ) } );
auto corners = cornersArray.template mutable_unchecked< 2 >();
for( int i = 0; i < size; ++i )
{
const auto corner = self.corner( i );
for( int j = 0; j < coorddimension; ++j )
corners( j, i ) = corner[ j ];
}
return cornersArray;
} );
cls.def_property_readonly( "corners", [] ( const Geometry &self ) {
const int size = self.corners();
pybind11::tuple corners( size );
for( int i = 0; i < size; ++i )
corners[ i ] = pybind11::cast( self.corner( i ) );
return corners;
},
R"doc(
get global positions of all reference corners
Note:
This function differs from the vectorized version of 'corner'
in the way the corners are returned. This method returns a
tuple of global positions of type FieldVector.
Returns:
tuple of global positions, in the order given by the reference element
)doc" );
cls.def_property_readonly( "center", [] ( const Geometry &self ) { return self.center(); },
R"doc(
global position of the barycenter of the reference element
)doc" );
cls.def_property_readonly( "volume", [] ( const Geometry &self ) { return self.volume(); },
R"doc(
volume of the map's image
The volume is measured using the Hausdorff measure of the corresponding dimension.
)doc" );
cls.def_property_readonly( "affine", [] ( const Geometry &self ) { return self.affine(); },
R"doc(
True, if the map is affine-linear, False otherwise
)doc" );
cls.def_property_readonly( "referenceElement", []( const Geometry &self ) {
return referenceElement< double, mydimension >( self.type() );
}, pybind11::keep_alive< 0, 1 >(),
R"doc(
corresponding reference element, describing the domain of the map
)doc" );
cls.def( "toGlobal", [] ( const Geometry &self, const LocalCoordinate &x ) { return self.global( x ); }, "x"_a,
R"doc(
obtain global position of a local point
Args:
x: local point
Returns:
global position of x
Note: This method may be used in vectorized form by passing in a
NumPy array for 'x'.
)doc" );
cls.def( "toGlobal", [] ( const Geometry &self, Array x ) {
return vectorize( [ &self ] ( const LocalCoordinate &x ) { return self.global( x ); }, x );
} );
cls.def( "toLocal", [] ( const Geometry &self, const GlobalCoordinate &y ) { return self.local( y ); }, "y"_a,
R"doc(
obtain local point mapped to a global position
Args:
y: global position
Returns:
local point mapped to y
Note: This method may be used in vectorized form by passing in a
NumPy array for 'y'.
)doc" );
cls.def( "toLocal", [] ( const Geometry &self, Array y ) {
return vectorize( [ &self ] ( const GlobalCoordinate &y ) { return self.local( y ); }, y );
} );
cls.def( "integrationElement", [] ( const Geometry &self, const LocalCoordinate &x ) { return self.integrationElement( x ); }, "x"_a,
R"doc(
obtain integration element in a local point
The integration element is the factor appearing in the integral
transformation formula.
It describes the weight factor when transforming a quadrature rule
on the reference element into a quadrature rule on the image of this
map.
Args:
x: local point
Returns:
integration element in x
Note: This method may be used in vectorized form by passing in a
NumPy array for 'x'.
)doc" );
cls.def( "integrationElement", [] ( const Geometry &self, Array x ) {
return vectorize( [ &self ] ( const LocalCoordinate &x ) { return self.integrationElement( x ); }, x );
} );
cls.def( "jacobian", [] ( const Geometry &self, const LocalCoordinate &x ) {
return static_cast< Jacobian >( self.jacobian( x ) );
}, "x"_a,
R"doc(
obtain the Jacobian of this mapping in a local point
The Jacobian describes the push-forward for tangential
vectors from the reference domain to the image of this map.
Args:
x: local point
Returns:
Jacobian matrix in x
Note: This method may be used in vectorized form by passing in a
NumPy array for 'x'.
)doc" );
cls.def( "jacobian", [] ( const Geometry &self, Array x ) {
return vectorize( [ &self ] ( const LocalCoordinate &x ) { return static_cast< Jacobian >( self.jacobian( x ) ); }, x );
} );
cls.def( "jacobianTransposed", [] ( const Geometry &self, const LocalCoordinate &x ) {
return static_cast< JacobianTransposed >( self.jacobianTransposed( x ) );
}, "x"_a,
R"doc(
obtain transposed of the Jacobian of this mapping in a local point
The rows of the returned matrix describe the tangential vectors in
the global position of the local point.
The Jacobian itself describes the push-forward for tangential
vectors from the reference domain to the image of this map.
Args:
x: local point
Returns:
transposed of the Jacobian matrix in x
Note: This method may be used in vectorized form by passing in a
NumPy array for 'x'.
)doc" );
cls.def( "jacobianTransposed", [] ( const Geometry &self, Array x ) {
return vectorize( [ &self ] ( const LocalCoordinate &x ) { return static_cast< JacobianTransposed >( self.jacobianTransposed( x ) ); }, x );
} );
cls.def( "jacobianInverse", [] ( const Geometry &self, const LocalCoordinate &x ) {
return static_cast< JacobianInverse >( self.jacobianInverse( x ) );
}, "x"_a,
R"doc(
obtain inverse Jacobian of this mapping in a local point
The inverse Jacobian describes the push-forward of cotangential
vectors from the reference domain to the image of this map.
Args:
x: local point
Returns:
Inverse Jacobian matrix in x
Note: This method may be used in vectorized form by passing in a
NumPy array for 'x'.
)doc" );
cls.def( "jacobianInverse", [] ( const Geometry &self, Array x ) {
return vectorize( [ &self ] ( const LocalCoordinate &x ) { return static_cast< JacobianInverse >( self.jacobianInverse( x ) ); }, x );
} );
cls.def( "jacobianInverseTransposed", [] ( const Geometry &self, const LocalCoordinate &x ) {
return static_cast< JacobianInverseTransposed >( self.jacobianInverseTransposed( x ) );
}, "x"_a,
R"doc(
obtain transposed of the inverse Jacobian of this mapping in a local point
This matrix describes the push-forward for local function gradients
to the image of this map.
The inverse Jacobian itself describes the push-forward of cotangential
vectors from the reference domain to the image of this map.
Args:
x: local point
Returns:
transposed of the Jacobian matrix in x
Note: This method may be used in vectorized form by passing in a
NumPy array for 'x'.
)doc" );
cls.def( "jacobianInverseTransposed", [] ( const Geometry &self, Array x ) {
return vectorize( [ &self ] ( const LocalCoordinate &x ) { return static_cast< JacobianInverseTransposed >( self.jacobianInverseTransposed( x ) ); }, x );
} );
cls.def( "pushForwardGradients", [] ( const Geometry &self, Array x, pybind11::array_t<double> g ) {
return pushForwardGradients(self,x,g);
} );
}
} // namespace detail
// registerGridGeometry
// --------------------
template< class Base, class Geometry = typename Base::Geometry >
inline static pybind11::class_< Geometry > registerGridGeometry ( pybind11::handle scope )
{
auto entry = insertClass< Geometry >( scope, "Geometry", GenerateTypeName( scope, "Geometry" ) );
if ( entry.second )
detail::registerGridGeometry( scope, entry.first );
return entry.first;
}
} // namespace Python
} // namespace Dune
#endif // #ifndef DUNE_PYTHON_GRID_GEOMETRY_HH
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