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// SPDX-FileCopyrightText: Copyright © DUNE Project contributors, see file LICENSE.md in module root
// SPDX-License-Identifier: LicenseRef-GPL-2.0-only-with-DUNE-exception
// -*- tab-width: 2; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=4 sw=2 sts=2:
#ifndef DUNE_PYTHON_GRID_GRIDPART_HH
#define DUNE_PYTHON_GRID_GRIDPART_HH
#include <array>
#include <stdexcept>
#include <string>
#include <type_traits>
#include <utility>
#include <dune/common/hybridutilities.hh>
#include <dune/common/typetraits.hh>
#include <dune/common/typeutilities.hh>
#include <dune/common/visibility.hh>
#include <dune/grid/common/datahandleif.hh>
#include <dune/grid/io/file/vtk/vtkwriter.hh>
#include <dune/python/grid/entity.hh>
#include <dune/python/grid/indexset.hh>
#include <dune/python/grid/mapper.hh>
#include <dune/python/grid/intersection.hh>
#include <dune/python/grid/numpy.hh>
#include <dune/python/grid/range.hh>
#include <dune/python/grid/vtk.hh>
#include <dune/python/grid/capabilities.hh>
#include <dune/python/grid/numpycommdatahandle.hh>
#include <dune/python/pybind11/pybind11.h>
#include <iostream>
#if HAVE_DUNE_VTK
#include <dune/vtk/gridfunctions/gridfunction.hh>
#endif
namespace Dune
{
namespace Python
{
// ProxyDataHandle for parallel communication
// ------------------------------------------
struct DUNE_PRIVATE ProxyDataHandle
: public Dune::CommDataHandleIF< ProxyDataHandle, double >
{
ProxyDataHandle ( pybind11::object dataHandle )
: contains_( method( dataHandle, "contains" ) ),
fixedSze_( method( dataHandle, "fixedSize" ) ),
size_( method( dataHandle, "size" ) ),
gather_( method( dataHandle, "gather" ) ),
scatter_( method( dataHandle, "scatter" ) )
{}
bool contains ( int dim, int codim ) const { return contains_( dim, codim ).cast< bool >(); }
bool fixedSize ( int dim, int codim ) const { return fixedSze_( dim, codim ).cast< bool >(); }
template< class Entity >
std::size_t size ( const Entity &entity ) const
{
return size_( entity ).template cast< std::size_t >();
}
template< class Buffer, class Entity >
void gather ( Buffer &buffer, const Entity &entity ) const
{
pybind11::list data = gather_( entity );
for( const pybind11::handle &x : data )
buffer.write( x.template cast< double >() );
}
template< class Buffer, class Entity >
void scatter ( Buffer &buffer, const Entity &entity, std::size_t n )
{
pybind11::list data;
for( std::size_t i = 0; i < n; ++i )
{
double x;
buffer.read( x );
data.append( pybind11::cast( x ) );
}
scatter_( entity, data );
}
private:
pybind11::object method ( pybind11::handle dataHandle, const char *name )
{
pybind11::object method = dataHandle.attr( name );
if( !method )
throw std::invalid_argument( std::string( "Method \"" ) + name + std::string( "\" missing from data handle." ) );
return method;
}
pybind11::object contains_, fixedSze_;
pybind11::object size_, gather_, scatter_;
};
namespace detail
{
// registerGridViewConstructorFromGrid
// -----------------------------------
template< class GridView, class... options, std::enable_if_t< std::is_same< GridView, typename GridView::Grid::LeafGridView >::value, int > = 0 >
void registerGridViewConstructorFromGrid ( pybind11::class_< GridView, options... > &cls, PriorityTag< 2 > )
{
cls.def( pybind11::init( [] ( typename GridView::Grid &grid ) { return new GridView( grid.leafGridView() ); } ), pybind11::keep_alive< 1, 2 >() );
cls.def( pybind11::pickle( [](const pybind11::object &self) { // __getstate__
GridView& gv = self.cast<GridView&>();
/* Return a tuple that fully encodes the state of the object */
pybind11::dict d;
if (pybind11::hasattr(self, "__dict__")) {
d = self.attr("__dict__");
}
return pybind11::make_tuple(gv.grid(),d);
},
[](pybind11::tuple t) { // __setstate__
if (t.size() != 2)
throw std::runtime_error("Invalid state in GridView::setstate with "+std::to_string(t.size())+"arguments!");
pybind11::handle pyHg = t[0];
typename GridView::Grid& hg = pyHg.cast<typename GridView::Grid&>();
/* Create a new C++ instance */
auto py_state = t[1].cast<pybind11::dict>();
return std::make_pair(new GridView(hg.leafGridView()), py_state);
}
),pybind11::keep_alive<1,2>());
}
template< class GridView, class... options, std::enable_if_t< std::is_constructible< GridView, typename GridView::Grid & >::value, int > = 0 >
void registerGridViewConstructorFromGrid ( pybind11::class_< GridView, options... > &cls, PriorityTag< 1 > )
{
cls.def( pybind11::init( [] ( typename GridView::Grid &grid ) { return new GridView( grid ); } ), pybind11::keep_alive< 1, 2 >() );
cls.def( pybind11::pickle( [](const pybind11::object &self) { // __getstate__
GridView& gv = self.cast<GridView&>();
/* Return a tuple that fully encodes the state of the object */
pybind11::dict d;
if (pybind11::hasattr(self, "__dict__")) {
d = self.attr("__dict__");
}
return pybind11::make_tuple(gv.grid(),d);
},
[](pybind11::tuple t) { // __setstate__
if (t.size() != 2)
throw std::runtime_error("Invalid state in GridView::setstate with "+std::to_string(t.size())+"arguments!");
pybind11::handle pyHg = t[0];
typename GridView::Grid& hg = pyHg.cast<typename GridView::Grid&>();
/* Create a new C++ instance */
auto py_state = t[1].cast<pybind11::dict>();
return std::make_pair(new GridView(hg), py_state);
}
),pybind11::keep_alive<1,2>());
}
template< class GridView, class... options >
void registerGridViewConstructorFromGrid ( pybind11::class_< GridView, options... > &, PriorityTag< 0 > )
{}
} // namespace detail
// registerGridView
// ----------------
template< class GridView, class... options >
inline static void registerGridView ( pybind11::handle scope, pybind11::class_< GridView, options... > cls )
{
typedef typename GridView::Grid Grid;
typedef PyGridViewIterator< GridView, 0 > PyElementIterator;
using pybind11::operator""_a;
pybind11::options opts;
opts.disable_function_signatures();
detail::registerGridViewConstructorFromGrid( cls, PriorityTag< 42 >() );
cls.attr( "dimGrid" ) = pybind11::int_( static_cast< int >( GridView::dimension ) );
cls.attr( "dimWorld" ) = pybind11::int_( static_cast< int >( GridView::dimensionworld ) );
registerGridEntities< GridView >( cls );
registerGridIntersection< GridView >( cls );
cls.def( "_mapper", [] ( GridView &self, pybind11::object layout ) {
return makeMultipleCodimMultipleGeomTypeMapper( self, layout );
}, pybind11::keep_alive< 0, 1 >(), "layout"_a,
R"doc(
Set up a mapper to attach data to the grid. The layout argument defines how many
degrees of freedom to assign to each subentity of a geometry type.
Args:
layout: function, dict, tuple, or list defining the number of indices to reserve
for each geometry type.
If layout is a dict, is must map geometry types to integers. All types not mentioned in
the dictionary are assumed to be zero.
If layout is a tuple or a list, it must contain exactly dimension+1 integers, one for
each codimension in the grid.
if layout is a function it maps a geometry type to the number of degrees of freedom to
reserve. Here a return value of 0 or `False` indicates that no data is to be attach, `True` can be used instead of 1.
Returns: the mapper
)doc" );
// register iterators
Hybrid::forEach( std::make_integer_sequence< int, GridView::dimension+1 >(), [] ( auto codim ) {
registerPyGridViewIterator< GridView, codim >();
} );
if( Capabilities::canIterate< Grid, 0 >::value )
cls.def_property_readonly( "elements", [] ( pybind11::object self ) { return makePyGridViewIterator< GridView, 0 >( self ); },
R"doc(
sequence of all elements (i.e., entities of codimension 0)
)doc" );
if( Capabilities::canIterate< Grid, 1 >::value )
cls.def_property_readonly( "facets", [] ( pybind11::object self ) { return makePyGridViewIterator< GridView, 1 >( self ); },
R"doc(
range of all facets (i.e., entities of codimension 1)
)doc" );
if( Capabilities::canIterate< Grid, GridView::dimension-1 >::value )
cls.def_property_readonly( "edges", [] ( pybind11::object self ) { return makePyGridViewIterator< GridView, GridView::dimension-1 >( self ); },
R"doc(
range of all edges (i.e., entities of dimension 1)
)doc" );
if( Capabilities::canIterate< Grid, GridView::dimension >::value )
cls.def_property_readonly( "vertices", [] ( pybind11::object self ) { return makePyGridViewIterator< GridView, GridView::dimension >( self ); },
R"doc(
range of all vertices (i.e., entities of dimension 0)
)doc" );
std::array< pybind11::object (*) ( pybind11::object ), GridView::dimension+1 > makePyGridViewIterators;
Hybrid::forEach( std::make_integer_sequence< int, GridView::dimension+1 >(), [ &makePyGridViewIterators ] ( auto codim ) {
makePyGridViewIterators[ codim ] = makePyGridViewIterator< GridView, codim >;
} );
cls.def( "entities", [ makePyGridViewIterators ] ( pybind11::object self, int codim ) {
if( (codim < 0) || (codim > GridView::dimension) )
throw pybind11::value_error( "Invalid codimension: " + std::to_string( codim ) + " (must be in [0, " + std::to_string( GridView::dimension ) + "])." );
return makePyGridViewIterators[ codim ]( self );
}, "codim"_a,
R"doc(
get range of entities for a codimension
Args:
codim: Codimension to obtain range of entities for
)doc" );
registerPyIntersectionIterator< GridView >();
cls.def( "intersections", [] ( const GridView &self, const typename GridView::template Codim< 0 >::Entity &e ) {
return PyIntersectionIterator< GridView >( self.ibegin( e ), self.iend( e ) );
}, pybind11::keep_alive< 0, 1 >(), "element"_a,
R"doc(
get range of all codim-1 intersections for an element
Args:
element: Element of obtain intersections for
)doc" );
registerPyBoundaryIntersectionIterator< GridView, PyElementIterator >();
cls.def_property_readonly( "boundaryIntersections", [] ( const GridView &self ) {
return PyBoundaryIntersectionIterator< GridView, PyElementIterator >( self, PyElementIterator( self.template begin< 0 >(), self.template end< 0 >() ) );
}, pybind11::keep_alive< 0, 1 >(),
R"doc(
range of all codim-1 boundary intersections of the grid
)doc" );
// register partitions
registerGridViewPartition< GridView, Interior_Partition >();
registerGridViewPartition< GridView, InteriorBorder_Partition >();
registerGridViewPartition< GridView, Overlap_Partition >();
registerGridViewPartition< GridView, OverlapFront_Partition >();
registerGridViewPartition< GridView, All_Partition >();
registerGridViewPartition< GridView, Ghost_Partition >();
cls.def_property_readonly( "interiorPartition", [] ( pybind11::object self ) {
return GridViewPartition< GridView, Interior_Partition >( self );
}, R"doc(
Partition containing only interior entities.
)doc" );
cls.def_property_readonly( "interiorBorderPartition", [] ( pybind11::object self ) {
return GridViewPartition< GridView, InteriorBorder_Partition >( self );
}, R"doc(
Partition containing only interior and border entities.
)doc" );
cls.def_property_readonly( "overlapPartition", [] ( pybind11::object self ) {
return GridViewPartition< GridView, Overlap_Partition >( self );
}, R"doc(
Partition containing only interior, border and overlap entities.
)doc" );
cls.def_property_readonly( "overlapFrontPartition", [] ( pybind11::object self ) {
return GridViewPartition< GridView, OverlapFront_Partition >( self );
}, R"doc(
Partition containing only interior, border, overlap, and front entities.
)doc" );
cls.def_property_readonly( "allPartition", [] ( pybind11::object self ) {
return GridViewPartition< GridView, All_Partition >( self );
}, R"doc(
Partition containing all entities.
)doc" );
cls.def_property_readonly( "ghostPartition", [] ( pybind11::object self ) {
return GridViewPartition< GridView, Ghost_Partition >( self );
}, R"doc(
Partition containing only ghost entities.
)doc" );
cls.def("__repr__",
[] (const GridView &gridView) -> std::string {
return "LeafGrid with " + std::to_string(gridView.indexSet().size(0)) + " elements";
});
cls.def_property_readonly( "hierarchicalGrid", [] ( const GridView &self ) -> const Grid & { return self.grid(); },
R"doc(
associated hierarchical grid
)doc" );
cls.def_property_readonly( "grid", [] ( const GridView &self ) -> const Grid & { return self.grid(); },
R"doc(
associated hierarchical grid
)doc" );
cls.def_property_readonly_static( "dimension", [] ( pybind11::object ) { return int(GridView::dimension); } );
cls.def_property_readonly_static( "dimensionworld", [] ( pybind11::object ) { return int(GridView::dimensionworld); } );
cls.def( "size", [] ( const GridView &self, int codim ) {
if( (codim < 0) || (codim > GridView::dimension) )
throw pybind11::value_error( "Invalid codimension: " + std::to_string( codim ) + " (must be in [0, " + std::to_string( GridView::dimension ) + "])." );
return self.size( codim );
}, "codim"_a,
R"doc(
Args:
codim: required codimension
Returns: number of subentities of codimension `codim`
)doc" );
cls.def( "size", [] ( const GridView &self, Dune::GeometryType gt ) {
if( (gt.dim() < 0) || (gt.dim() > GridView::dimension) )
throw pybind11::value_error( "Invalid geometry type (dimension must be in [0, " + std::to_string( GridView::dimension ) + "])." );
return self.size( gt );
}, "gt"_a,
R"doc(
Args:
gt: a geometry type
Returns: number of subentities of the given geometry type
)doc" );
registerVTKWriter< GridView >( cls );
cls.def( "vtkWriter", [] ( const GridView &self, const bool nonconforming = false ) {
const VTK::DataMode dm = nonconforming ? VTK::nonconforming : VTK::conforming;
return new VTKWriter< GridView >( self, dm );
}, pybind11::keep_alive< 0, 1 >() );
cls.def( "vtkWriter", [] ( const GridView &self, int subsampling ) {
return new SubsamplingVTKWriter< GridView >( self,
Dune::refinementIntervals(1<<subsampling) );
}, pybind11::keep_alive< 0, 1 >(), "subsampling"_a );
cls.def( "overlapSize", [] ( const GridView &self, int codim ) {
if( (codim < 0) || (codim > GridView::dimension) )
throw pybind11::value_error( "Invalid codimension: " + std::to_string( codim ) + " (must be in [0, " + std::to_string( GridView::dimension ) + "])." );
return self.overlapSize( codim );
}, "codim"_a );
cls.def( "ghostSize", [] ( const GridView &self, int codim ) {
if( (codim < 0) || (codim > GridView::dimension) )
throw pybind11::value_error( "Invalid codimension: " + std::to_string( codim ) + " (must be in [0, " + std::to_string( GridView::dimension ) + "])." );
return self.ghostSize( codim );
}, "codim"_a );
cls.def_property_readonly( "_indexSet", [] ( const GridView &self ) -> const typename GridView::IndexSet & {
return self.indexSet();
}, pybind11::return_value_policy::reference, pybind11::keep_alive< 0, 1 >(),
R"doc(
index set for the grid
)doc" );
cls.def_property_readonly( "comm", [] ( const GridView &gridView ) -> const typename Grid::Communication & {
return gridView.grid().comm();
}, pybind11::return_value_policy::reference, pybind11::keep_alive< 0, 1 >(),
R"doc(
collective communication for the grid
Note: For collective (or global) operations, all processes in this
collective communication must call the corresponding method.
)doc" );
typedef NumPyCommDataHandle< MultipleCodimMultipleGeomTypeMapper< GridView >, double, std::function< double ( double, double ) > > CommDataHandle;
cls.def( "communicate", [] ( const GridView &gridView, CommDataHandle &dataHandle, InterfaceType iftype, CommunicationDirection dir ) {
gridView.communicate( dataHandle, iftype, dir );
} );
cls.def( "communicate", [] ( const GridView &gridView, pybind11::object dataHandle, InterfaceType iftype, CommunicationDirection dir ) {
ProxyDataHandle proxyDataHandle( std::move( dataHandle ) );
gridView.communicate( proxyDataHandle, iftype, dir );
});
// export grid capabilities
cls.def_property_readonly( "conforming", [] ( pybind11::object ) { return static_cast< bool >( GridView::conforming ); } );
if( Capabilities::hasSingleGeometryType< Grid >::v )
cls.def_property_readonly_static( "type", [] ( pybind11::object ) {
return GeometryType( Capabilities::hasSingleGeometryType< Grid >::topologyId, Grid::dimension );
} );
cls.def_property_readonly_static( "isCartesian", [] ( pybind11::object ) { return Capabilities::isCartesian< Grid >::v; } );
cls.def_property_readonly_static( "canCommunicate", [] ( pybind11::object ) {
pybind11::tuple canCommunicate( Grid::dimension+1 );
Hybrid::forEach( std::make_integer_sequence< int, Grid::dimension+1 >(), [ &canCommunicate ] ( auto codim ) {
canCommunicate[ codim ] = pybind11::cast( bool( Capabilities::canCommunicate< Grid, codim >::v ) );
} );
return canCommunicate;
} );
cls.def_property_readonly_static( "threadSafe", [] ( pybind11::object ) { return Capabilities::viewThreadSafe< Grid >::v; } );
// export utility methods
cls.def( "coordinates", [] ( const GridView &self, int dimworld ) { return coordinates( self, dimworld ); },
"dimworld"_a=GridView::dimensionworld,
R"doc(
Returns: `numpy` array with the coordinates of all vertices in the grid in
the format `[ [x_1,y_1], [x_2,y_2], ..., [x_N,y_N] ]` for example
in 2d (will be filled up by zeros if dimworld is larger
than the world dimension of the view.
)doc" );
cls.def( "tessellate", [] ( const GridView &self, int level, int dimworld) { return tessellate( self, level, dimworld ); },
"level"_a = 0, pybind11::kw_only(), "dimworld"_a=GridView::dimensionworld,
R"doc(
Generated a possibly refined tessellation using only simplices.
Args:
level: virtual refinement level to use to generate the tessellation
Returns: (coordinates,simplices) where coordinates is a `numpy` array
of the vertex coordinates (padded by to `dimworld` is needed)
(e.g. in 2d `[ [x_1,y_1,0], [x_2,y_2,0], ..., [x_N,y_N],0 ]`
if `dimworld` is set to 3 - default is no padding,
`dimworld` less than actual world dimension of grid is ignored)
and simplices is a `numpy` array of the vertices of the simplices
(e.g. in 2d `[s_11,s_12,s_13], [s_21,s_22,s_23], ..., [s_N1,s_N2,s_N3] ]` )
)doc" );
auto tessellateWithPartition = [&cls](auto &part)
{
cls.def( "tessellate", [] ( const GridView &self, int level,
decltype(part) partition, int dimworld)
{ return tessellate( self, level, partition, dimworld ); },
"level"_a = 0, pybind11::kw_only(), "partition"_a, "dimworld"_a=GridView::dimensionworld,
R"doc(
Generated a possibly refined tessellation using only simplices.
Args:
level: virtual refinement level to use to generate the tessellation
Returns: (coordinates,simplices) where coordinates is a `numpy` array
of the vertex coordinates (padded by to `dimworld` is needed)
(e.g. in 2d `[ [x_1,y_1,0], [x_2,y_2,0], ..., [x_N,y_N],0 ]`
if `dimworld` is set to 3 - default is no padding,
`dimworld` less than actual world dimension of grid is ignored)
and simplices is a `numpy` array of the vertices of the simplices
(e.g. in 2d `[s_11,s_12,s_13], [s_21,s_22,s_23], ..., [s_N1,s_N2,s_N3] ]` )
)doc" );
};
tessellateWithPartition(Dune::Partitions::interior);
tessellateWithPartition(Dune::Partitions::ghost);
tessellateWithPartition(Dune::Partitions::all);
tessellateWithPartition(Dune::Partitions::interiorBorder);
tessellateWithPartition(Dune::Partitions::interiorBorderOverlap);
tessellateWithPartition(Dune::Partitions::interiorBorderOverlapFront);
cls.def( "polygons", [] ( const GridView &self ) { return polygons( self ); },
R"doc(
Store the grid in numpy arrays.
Returns: coordinate array storing the vertex coordinate of each polygon
in the grid.
)doc" );
cls.def( "contains", [] ( GridView &self, pybind11::object entity ) {
bool found = false, contained = false;
Hybrid::forEach( std::make_integer_sequence< int, GridView::dimension+1 >(), [ &self, entity, &found, &contained ] ( auto codim ) {
typedef typename GridView::template Codim< decltype( codim )::value >::Entity Entity;
if( pybind11::isinstance< Entity >( entity ) )
{
found = true;
contained = self.contains( pybind11::cast< const Entity & >( entity ) );
}
} );
if( found )
return contained;
else
throw pybind11::value_error( "Argument 'entity' is not a valid entity for this grid." );
}, "entity"_a,
R"doc(
Check whether an entity is contained in the grid instance
Args:
entity: entity to check
Note:
- The entity must be contained in the corresponding hierarchical grid.
)doc" );
#if HAVE_DUNE_VTK
using VirtualizedGF = Dune::Vtk::GridFunction<GridView>;
auto vgfClass = Python::insertClass<VirtualizedGF>(scope,"VtkFunction",
Python::GenerateTypeName("Dune::Vtk::GridFunction", MetaType<GridView>()),
Python::IncludeFiles{"dune/vtk/gridfunctions/gridfunction.hh"});
if( vgfClass.second )
{
vgfClass.first.def("name",[](VirtualizedGF &self) { return self.name(); });
}
#endif
auto addAttr = pybind11::module::import( "dune.grid.grid_generator" ).attr("addAttr");
addAttr(scope, cls);
}
} // namespace Python
} // namespace Dune
#endif // #ifndef DUNE_PYTHON_GRID_GRIDPART_HH
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