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// SPDX-FileCopyrightText: Copyright © DUNE Project contributors, see file LICENSE.md in module root
// SPDX-License-Identifier: LicenseRef-GPL-2.0-only-with-DUNE-exception
// -*- tab-width: 2; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=4 sw=2 sts=2:
#ifndef DUNE_PYTHON_GRID_MAPPER_HH
#define DUNE_PYTHON_GRID_MAPPER_HH
#include <functional>
#include <dune/common/visibility.hh>
#include <dune/grid/common/mcmgmapper.hh>
#include <dune/python/grid/commops.hh>
#include <dune/python/grid/range.hh>
#include <dune/python/grid/numpycommdatahandle.hh>
#include <dune/python/common/typeregistry.hh>
#include <dune/python/pybind11/pybind11.h>
#include <dune/python/pybind11/functional.h>
#include <dune/python/pybind11/numpy.h>
namespace Dune
{
namespace Python
{
namespace detail
{
// mapperSubIndex
// --------------
template< class Mapper, class Entity >
inline static pybind11::object mapperSubIndex ( const Mapper &mapper, const Entity &entity, int i, int c )
{
if( (c < Entity::codimension) || (c > Entity::dimension) )
throw pybind11::value_error( "Invalid codimension: " + std::to_string( c ) + " (must be in [" + std::to_string( Entity::codimension ) + ", " + std::to_string( Entity::dimension ) + "])" );
const int size = entity.subEntities( c );
if( (i < 0) || (i >= size) )
throw pybind11::value_error( "Invalid index: " + std::to_string( i ) + " (must be in [0, " + std::to_string( size ) + "))." );
typename Mapper::Index index;
return (mapper.contains( entity, i, c, index ) ? pybind11::cast( index ) : pybind11::none());
}
// registerMapperSubIndex
// ----------------------
template< class Entity, class Mapper, class... options >
inline static std::enable_if_t< Entity::codimension == 0 >
registerMapperSubIndex ( pybind11::class_< Mapper, options... > cls, PriorityTag< 1 > )
{
using pybind11::operator""_a;
pybind11::options opts;
opts.disable_function_signatures();
cls.def( "subIndex", [] ( const Mapper &self, const Entity &entity, int i, int c ) {
return detail::mapperSubIndex( self, entity, i, c );
}, "entity"_a, "i"_a, "c"_a,
R"doc(
Args:
entity: an entity of the grid
i: number of subentity of `entity`
c: codimension of the subentity
Returns: the starting index of the dofs attached to the `ith` subentity
of codimension `c` of the given entity.
)doc" );
cls.def( "subIndex", [] ( const Mapper &self, const Entity &entity, std::tuple< int, int > subEntity ) {
return detail::mapperSubIndex( self, entity, std::get< 0 >( subEntity ), std::get< 1 >( subEntity ) );
}, "entity"_a, "subEntity"_a,
R"doc(
Args:
entity: an entity of the grid
(i,c): number and codimension of a subentity of `entity`
Returns: the starting index of the dofs attached to the `ith` subentity
of codimension `c` of the given entity.
)doc" );
cls.def( "subIndices", [] ( const Mapper &self, const Entity &entity, int codim ) {
if( (codim < Entity::codimension) || (codim > Entity::dimension) )
throw pybind11::value_error( "Invalid codimension: " + std::to_string( codim ) + " (must be in [" + std::to_string( Entity::codimension ) + ", " + std::to_string( Entity::dimension ) + "])" );
const int size = entity.subEntities( codim );
pybind11::tuple subIndices( size );
for( int i = 0; i < size; ++i )
{
typename Mapper::Index index;
subIndices[ i ] = (self.contains( entity, i, codim, index ) ? pybind11::cast( index ) : pybind11::none());
}
return subIndices;
}, "entity"_a, "codim"_a,
R"doc(
Args:
entity: an entity of the grid
codim: codimension of a subentity of `entity`
Returns: indices of dofs attached to all subentity
of codimension `codim` of the given entity.
)doc" );
}
template< class Entity, class Mapper, class... options >
inline static void registerMapperSubIndex ( pybind11::class_< Mapper, options... > cls, PriorityTag< 0 > )
{}
template< class Entity, class Mapper, class... options >
inline static void registerMapperSubIndex ( pybind11::class_< Mapper, options... > cls )
{
registerMapperSubIndex< Entity >( cls, PriorityTag< 42 >() );
}
template <class Mapper>
void mapperCommunicate(const Mapper &mapper, CommOp commOp,
std::vector<pybind11::array_t<double>> data,
InterfaceType iftype, CommunicationDirection dir )
{
switch (commOp)
{
case add:
{
auto dataHandle = numPyCommDataHandle( mapper, data,
[] (double local, double remote) {return remote+local;});
mapper.gridView().communicate( dataHandle, iftype, dir );
}
case set:
{
auto dataHandle = numPyCommDataHandle( mapper, data,
[] (double local, double remote) {return remote;});
mapper.gridView().communicate( dataHandle, iftype, dir );
}
}
}
} // namespace detail
// makeMultipleCodimMultipleGeomTypeMapper
// ---------------------------------------
template< class GridView >
MultipleCodimMultipleGeomTypeMapper< GridView > *makeMultipleCodimMultipleGeomTypeMapper ( const GridView &gridView, pybind11::object layout )
{
typedef MultipleCodimMultipleGeomTypeMapper< GridView > MCMGMapper;
if( pybind11::isinstance< pybind11::function >( layout ) )
{
const auto function = pybind11::cast< pybind11::function >( layout );
return new MCMGMapper( gridView, [ function ] ( Dune::GeometryType gt, int griddim ) -> unsigned int { return pybind11::cast< int >( function( gt ) ); } );
}
if( pybind11::isinstance< pybind11::dict >( layout ) )
{
typedef Dune::GlobalGeometryTypeIndex GTI;
std::array< unsigned int, GTI::size( GridView::dimension ) > count;
std::fill( count.begin(), count.end(), 0 );
for( auto entry : pybind11::cast< pybind11::dict >( layout ) )
count[ GTI::index( pybind11::cast< Dune::GeometryType >( entry.first ) ) ] = pybind11::cast< int >( entry.second );
return new MCMGMapper( gridView, [ count ] ( Dune::GeometryType gt, int griddim ) { return count[ Dune::GlobalGeometryTypeIndex::index( gt ) ]; } );
}
if( pybind11::isinstance< pybind11::tuple >( layout ) )
{
std::array< unsigned int, GridView::dimension+1 > count;
const auto tuple = pybind11::cast< pybind11::tuple >( layout );
if( pybind11::len( tuple ) != GridView::dimension+1 )
throw pybind11::value_error( "len(layout) must be " + std::to_string( GridView::dimension ) + "." );
for( int d = 0; d <= GridView::dimension; ++d )
count[ d ] = pybind11::cast< int >( tuple[ GridView::dimension - d ] );
return new MCMGMapper( gridView, [ count ] ( Dune::GeometryType gt, int griddim ) { return count[ gt.dim() ]; } );
}
if( pybind11::isinstance< pybind11::list >( layout ) )
{
std::array< unsigned int, GridView::dimension+1 > count;
const auto list = pybind11::cast< pybind11::list >( layout );
if( pybind11::len( list ) != GridView::dimension+1 )
throw pybind11::value_error( "len(layout) must be " + std::to_string( GridView::dimension ) + "." );
for( int d = 0; d <= GridView::dimension; ++d )
count[ d ] = pybind11::cast< int >( list[ GridView::dimension - d ] );
return new MCMGMapper( gridView, [ count ] ( Dune::GeometryType gt, int griddim ) { return count[ gt.dim() ]; } );
}
throw pybind11::value_error( "Argument 'layout' must be either a function, a dict, a tuple, or a list." );
}
// registerMapperCommunicate
// -------------------------
template < Dune::PartitionIteratorType fromType,
Dune::PartitionIteratorType toType,
Dune::InterfaceType interfaceType,
class Mapper >
inline static void registerMapperCommunicate(pybind11::class_<Mapper> cls)
{
using pybind11::operator""_a;
typedef typename Mapper::GridView GridView;
cls.def( "communicate",
[] ( const Mapper &self,
GridViewPartition< GridView, fromType > from,
GridViewPartition< GridView, toType > to,
detail::CommOp commOp, pybind11::args args ) {
std::vector<pybind11::array_t<double>> data(args.size());
for (unsigned int i=0;i<args.size();++i)
data[i] = pybind11::array_t<double>(args[i]);
mapperCommunicate(self,commOp, data, interfaceType, ForwardCommunication);
}, "from"_a, "to"_a, "commOp"_a);
cls.def( "communicate",
[] ( const Mapper &self,
GridViewPartition< GridView, fromType > from,
GridViewPartition< GridView, toType > to,
pybind11::function operation, pybind11::args args ) {
std::vector<pybind11::array_t<double>> data(args.size());
for (unsigned int i=0;i<args.size();++i)
data[i] = pybind11::array_t<double>(args[i]);
auto dataHandle = numPyCommDataHandle( self, data, operation.template cast<std::function<double(double,double)>>());
self.gridView().communicate( dataHandle, interfaceType, ForwardCommunication);
}, "from"_a, "to"_a, "operation"_a );
if (fromType != toType)
{
cls.def( "communicate",
[] ( const Mapper &self,
GridViewPartition< GridView, fromType > from,
GridViewPartition< GridView, toType > to,
detail::CommOp commOp, pybind11::args args ) {
std::vector<pybind11::array_t<double>> data(args.size());
for (unsigned int i=0;i<args.size();++i)
data[i] = pybind11::array_t<double>(args[i]);
mapperCommunicate(self,commOp, data, interfaceType, BackwardCommunication);
}, "from"_a, "to"_a, "commOp"_a );
cls.def( "communicate",
[] ( const Mapper &self,
GridViewPartition< GridView, fromType > from,
GridViewPartition< GridView, toType > to,
pybind11::function operation, pybind11::args args ) {
std::vector<pybind11::array_t<double>> data(args.size());
for (unsigned int i=0;i<args.size();++i)
data[i] = pybind11::array_t<double>(args[i]);
auto dataHandle = numPyCommDataHandle( self, data, operation.template cast<std::function<double(double,double)>>());
self.gridView().communicate( dataHandle, interfaceType, BackwardCommunication);
}, "from"_a, "to"_a, "operation"_a );
}
}
// registerMapper
// --------------
template< class GridView, class Mapper, class... options >
inline static void registerMapper ( pybind11::class_< Mapper, options... > cls )
{
using pybind11::operator""_a;
pybind11::options opts;
opts.disable_function_signatures();
cls.def( "__len__", [] ( const Mapper &self ) { return self.size(); },
R"doc(
Returns the maximum index plus 1 returns by the mapper.
Use to set the number of entries in the dof vector.
Note: corresponds to the `size()` method on the MCMGMapper.
)doc" );
cls.def_property_readonly( "size", [] ( const Mapper &self ) { return self.size(); },
R"doc(
Returns the maximum index plus 1 returns by the mapper.
Use to set the number of entries in the dof vector.
)doc" );
cls.def( "types", [] ( const Mapper &self, int codim ) {
pybind11::list types;
for( GeometryType type : self.types( codim ) )
types.append( pybind11::cast( type ) );
return types;
}, "codim"_a,
R"doc(
Args:
codim: codimension
Returns: list of geometry types of the given codimension with attached data
)doc" );
Hybrid::forEach( std::make_integer_sequence< int, GridView::dimension+1 >(), [ &cls ] ( auto codim ) {
typedef typename GridView::template Codim< codim >::Entity Entity;
using pybind11::operator""_a;
cls.def( "index", [] ( const Mapper &self, const Entity &e ) -> pybind11::object {
typename Mapper::Index index;
if( self.contains( e, index ) )
return pybind11::cast( index );
else
return pybind11::none();
}, "entity"_a,
R"doc(
Args:
entity: entity in the grid
Returns: the first index for dofs stored on the given entity
if no dofs are stored on this entity the return value is `None`
)doc" );
cls.def( "contains", [] ( const Mapper &self, const Entity &entity ) {
typename Mapper::Index index;
return self.contains( entity, index );
}, "entity"_a,
R"doc(
Args:
entity: entity in the grid
Returns: `True` if the data is stored on this entity
)doc" );
detail::registerMapperSubIndex< Entity >( cls );
} );
// see comment added to __init__ method for some details on reference counting
cls.def( "update", [] ( Mapper &self, GridView &grid ) { self.update(grid); },
R"doc(
Update the mapper after a grid modification.
Note: after grid modification the mapper is not valid anymore and needs to
be updated!
)doc" );
cls.def( "__call__", [] ( const Mapper &self, const typename GridView::template Codim< 0 >::Entity &element ) {
// need a cache gt(cdim=0) -> nof indices then we could store directly in retArray
std::vector< typename Mapper::Index > indices;
for( int c = GridView::dimension; c>=0; --c )
for( auto se : range( element.subEntities( c ) ) )
{
const auto &i = self.indices( element, se, c );
indices.insert( indices.end(), i.begin(), i.end() );
}
pybind11::array_t< std::size_t > retArray( indices.size() );
auto y = retArray.template mutable_unchecked< 1 >();
std::size_t idx = 0;
for ( auto i : indices )
y[idx++] = i;
return retArray;
}, "element"_a,
R"doc(
Args:
element: codim zero entity in the grid
Returns: list of all degrees of freedom attached to the given and
all subentities of the given entity.
)doc" );
registerMapperCommunicate<InteriorBorder_Partition,InteriorBorder_Partition,
InteriorBorder_InteriorBorder_Interface>(cls);
registerMapperCommunicate<InteriorBorder_Partition,All_Partition,
InteriorBorder_All_Interface>(cls);
registerMapperCommunicate<Overlap_Partition,OverlapFront_Partition,
Overlap_OverlapFront_Interface>(cls);
registerMapperCommunicate<Overlap_Partition,All_Partition,
Overlap_All_Interface>(cls);
registerMapperCommunicate<All_Partition,All_Partition,
All_All_Interface>(cls);
cls.def( "communicate",
[] ( const Mapper &self,
pybind11::object from, pybind11::object to, pybind11::object, pybind11::args args ) {
throw pybind11::value_error("Combination of 'to' and 'from' partition not legal");
}, "from"_a, "to"_a, "commOp"_a,
R"doc(
Communicate data stored in `numpy` arrays attached using the given mapper
Args:
from: partition used on sending processor
to: partition used on receiving processor
commOp: function (local,remote)->result defining how to combine received with locally stored data on receiving process
*args: data vectors to communicate
Returns: None
Note:
- At the moment only double numpy vectors are supported
- Not all combinations of `from` and `to` partitions are valid.
Possible combinations are
- from=interiorBorder and to=interiorBorder|all
- from=overlap and to=overlapFront|all
- from=overlapFront and to=overlap
- from=all and to=interiorBorder|overlap|all,
)doc" );
}
// registerMultipleCodimMultipleGeomTypeMapper
// -------------------------------------------
template< class MCMGMapper, class... options >
inline static auto registerMultipleCodimMultipleGeomTypeMapper( pybind11::handle scope, pybind11::class_< MCMGMapper, options... > cls )
{
typedef typename MCMGMapper::GridView GridView;
using pybind11::operator""_a;
registerMapper<GridView>(cls);
// Remark: the gridView is kept alive although the Mapper stores a
// copy - this is done to keep the underlying hierarchical grid alive
// during the whole life time of the mapper. For this reason the
// 'update(GV)' method does not add a keep_alive reference to the GV.
// If the update method is called with a GV belonging to a different
// HGrid this will cause havoc...
cls.def( pybind11::init( [] ( const GridView &gridView, pybind11::object layout ) {
return makeMultipleCodimMultipleGeomTypeMapper( gridView, layout );
} ), pybind11::keep_alive< 1, 2 >(), "grid"_a, "layout"_a,
R"doc(
Set up a mapper to attach data to a grid. The layout argument defines how many
degrees of freedom to assign to each subentity of a geometry type.
Args:
gridView: grid view to set the mapper up for
layout: function, dict, tuple, or list defining the number of indices to reserve
for each geometry type.
0 or `False`: do not attach any, `True` can be used instead of 1.
If layout is a dict, is must map geometry types to integers. All types not mentioned in
the dictionary are assumed to be zero.
If layout is a tuple or a list, it must contain exactly dimension+1 integers, one for
each codimension in the grid.
)doc" );
return cls;
}
template<typename GridView>
auto registerMultipleCodimMultipleGeomTypeMapper(pybind11::handle scope)
{
typedef MultipleCodimMultipleGeomTypeMapper<GridView> MCMGMapper;
auto cls = insertClass<MCMGMapper>(scope, "MultipleCodimMultipleGeomTypeMapper",
GenerateTypeName("Dune::MultipleCodimMultipleGeomTypeMapper", MetaType<GridView>()),
IncludeFiles{"dune/grid/common/mcmgmapper.hh","dune/python/grid/mapper.hh"}).first;
registerMultipleCodimMultipleGeomTypeMapper(scope,cls);
}
} // namespace Python
} // namespace Dune
#endif // #ifndef DUNE_PYTHON_GRID_MAPPER_HH
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