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/*
Copyright 2012-2018 Jyri J. Virkki <jyri@virkki.com>
This file is part of dupd.
dupd is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
dupd is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with dupd. If not, see <http://www.gnu.org/licenses/>.
*/
#include <assert.h>
#include <errno.h>
#include <fcntl.h>
#include <inttypes.h>
#include <pthread.h>
#include <sqlite3.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <strings.h>
#include <sys/stat.h>
#include <sys/types.h>
#include <unistd.h>
#include "dirtree.h"
#include "filecompare.h"
#include "hash.h"
#include "hashers.h"
#include "hashlist.h"
#include "main.h"
#include "readlist.h"
#include "scan.h"
#include "sizelist.h"
#include "sizetree.h"
#include "stats.h"
#include "utils.h"
static struct size_list * size_list_head;
static struct size_list * size_list_tail;
static int avg_read_time = 0;
static int read_count = 0;
static pthread_mutex_t show_processed_lock = PTHREAD_MUTEX_INITIALIZER;
#define HASHER_THREADS 2
/** ***************************************************************************
* Debug output, show the whole size list.
*
*/
// LCOV_EXCL_START
static void dump_size_list()
{
struct size_list * node = size_list_head;
printf("--- DUMP SIZE LIST\n");
while (node != NULL) {
printf("size : %" PRIu64 "\n", node->size);
printf("fully read : %d\n", node->fully_read);
printf("next : %p\n", node->next);
printf(" == pathlist follows:\n");
dump_path_list(" == pathlist follows", node->size, node->path_list, 1);
node = node->next;
}
printf("--- END SIZE LIST\n");
}
// LCOV_EXCL_STOP
/** ***************************************************************************
* Public function, see header file.
*
*/
void show_processed(int total, int files, uint64_t size)
{
d_mutex_lock(&show_processed_lock, "show_processed");
stats_size_list_done++;
LOG(L_PROGRESS, "Processed %d/%d (%d files of size %" PRIu64 ")\n",
stats_size_list_done, total, files, size);
if (stats_size_list_done > total) { // LCOV_EXCL_START
printf("\nThat's not right...\n");
exit(1);
} // LCOV_EXCL_STOP
d_mutex_unlock(&show_processed_lock);
}
/** ***************************************************************************
* Create a new size list node. A node contains one file size and points
* to the head of the path list of files which are of this size.
*
* Parameters:
* size - Size
* path_list - Head of path list of files of this size
*
* Return: An intialized/allocated size list node.
*
*/
static struct size_list * new_size_list_entry(uint64_t size,
struct path_list_head *path_list)
{
struct size_list * e = (struct size_list *)malloc(sizeof(struct size_list));
e->size = size;
e->path_list = path_list;
e->fully_read = 0;
if (pthread_mutex_init(&e->lock, NULL)) {
// LCOV_EXCL_START
printf("error: new_size_list_entry mutex init failed!\n");
exit(1);
} // LCOV_EXCL_STOP
e->next = NULL;
return e;
}
/** ***************************************************************************
* Tell hasher threads that reader is done.
*
* Parameters:
* hasher_info - Array of hasher thread params.
*
* Return: none
*
*/
static void signal_hashers(struct hasher_param * hasher_info)
{
struct hasher_param * queue_info = NULL;
// Let hashers know I'm done
for (int n = 0; n < HASHER_THREADS; n++) {
queue_info = &hasher_info[n];
d_mutex_lock(&queue_info->queue_lock, "reader saying bye");
queue_info->done = 1;
LOG(L_MORE_THREADS, "Marking hasher thread %d done\n", n);
d_cond_signal(&queue_info->queue_cond);
d_mutex_unlock(&queue_info->queue_lock);
}
}
/** ***************************************************************************
* Add a path list to the work queue of a hasher thread.
*
* Parameters:
* thread - Add it to this thread's queue.
* pathlist_head - Add this pathlist to the queue.
* hasher_info - Array of hasher thread params.
*
* Return: none
*
*/
static void submit_path_list(int thread,
struct path_list_head * pathlist_head,
struct hasher_param * hasher_info)
{
struct size_list * sizelist = pathlist_head->sizelist;
uint64_t size = sizelist->size;
struct hasher_param * queue_info = NULL;
LOG(L_THREADS, "Inserting set (%d files of size %" PRIu64
") pass %d in state %s into hasher queue %d\n",
pathlist_head->list_size, size, pathlist_head->hash_passes,
pls_state(pathlist_head->state), thread);
queue_info = &hasher_info[thread];
d_mutex_lock(&queue_info->queue_lock, "adding to queue");
if (queue_info->queue_pos == queue_info->size - 1) {
LOG(L_THREADS, "Hasher queue %d is full (pos=%d), increasing...\n",
thread, queue_info->queue_pos);
int oldend = queue_info->size;
int newend = queue_info->size * 2;
int newsize = sizeof(struct path_list_head *) * newend;
queue_info->queue =
(struct path_list_head **)realloc(queue_info->queue, newsize);
queue_info->size = newend;
for (int i = oldend; i < newend; i++) {
queue_info->queue[i] = NULL;
}
LOG(L_RESOURCES, "Increased hasher queue(%d) to %d entries\n",
thread, queue_info->size);
}
queue_info->queue_pos++;
queue_info->queue[queue_info->queue_pos] = pathlist_head;
LOG(L_MORE_THREADS, "Set (%d files of size %" PRIu64
") now in queue %d pos %d\n",
pathlist_head->list_size, size, thread, queue_info->queue_pos);
// Signal the corresponding hasher thread so it'll pick up the pathlist
d_cond_signal(&queue_info->queue_cond);
d_mutex_unlock(&queue_info->queue_lock);
}
/** ***************************************************************************
* Size list-based reader used to flush buffer usage down.
*
* This is called from read_list_reader if the data buffer usage grows
* beyond desired limit. Here we'll read in size_list order which allows
* free'ing buffers much sooner (but can be far slower on HDDs).
*
* Parameters:
* arg - Contains hasher_info array.
*
* Return: none
*
*/
static void * size_list_flusher(void * arg)
{
struct size_list * size_node;
struct size_list * size_node_next;
struct path_list_entry * entry;
int sets;
int bfpct;
int path_count;
struct hasher_param * hasher_info = (struct hasher_param *)arg;
struct hash_table * ht = init_hash_table();
size_node = size_list_head;
sets = 0;
stats_flusher_active = 1;
do {
d_mutex_lock(&size_node->lock, "flusher");
LOG(L_THREADS, "FL.SET %d size:%" PRIu64 " state:%s\n", ++sets,
size_node->size, pls_state(size_node->path_list->state));
if (size_node->path_list->state == PLS_NEED_DATA) {
reset_hash_table(ht);
entry = pb_get_first_entry(size_node->path_list);
while (entry != NULL) {
LOG_MORE_THREADS {
char buffer[DUPD_PATH_MAX];
build_path(entry, buffer);
LOG(L_MORE_THREADS, "FL.FILE %s state %s\n",
buffer, file_state(entry->state));
}
switch (entry->state) {
case FS_NEED_DATA:
case FS_BUFFER_READY:
add_hash_table(ht, entry, 0, 0, 0);
break;
case FS_INVALID:
break;
default:
printf("flusher bad state: %s\n", file_state(entry->state));
exit(1);
}
entry = entry->next;
}
skim_uniques(hasher_info->dbh, size_node->path_list, ht, save_uniques);
if (hash_table_has_dups(ht)) {
publish_duplicate_hash_table(hasher_info->dbh, ht, size_node->size);
increase_dup_counter(size_node->path_list->list_size);
}
size_node->path_list->state = PLS_DONE;
path_count = size_node->path_list->list_size;
show_processed(s_stats_size_list_count, path_count, size_node->size);
bfpct = (int)(100 * stats_read_buffers_allocated / buffer_limit);
if (bfpct < 85) {
LOG(L_THREADS, "size_list_flusher returning at %d%%\n", bfpct);
stats_flusher_active = 0;
d_mutex_unlock(&size_node->lock);
return NULL;
}
}
size_node_next = size_node->next;
d_mutex_unlock(&size_node->lock);
size_node = size_node_next;
} while (size_node != NULL);
stats_flusher_active = 0;
return NULL;
}
/** ***************************************************************************
* Fill one block (of hash block size being used) for 'entry' if possible.
* Reads from the current block (next_read_block) until either the desired
* amount of data has been read or the block is fully read.
*
* Also needs to handle if file has gaps on disk.
*
* Incoming state: entry is in FS_NEED_DATA.
*
* Outgoing state:
* If disk block didn't fill the hash block:
* - still in FS_NEED_DATA
* - next_read_block updated, next_read_byte updated
* If hash block filled or file fully read:
* - becomes FS_BUFFER_READY (head possibly PLS_ALL_BUFFERS_READY)
* - next_read_block updated, next_read_byte updated
* If unable to read expected bytes:
* - entry marked invalid (which might make head PLS_DONE)
*
* Return: true if current disk block was fully consumed.
*
*/
static int fill_data_block(struct path_list_head * head,
struct path_list_entry * entry,
char * path)
{
int rv = 0;
uint64_t filesize = head->sizelist->size;
// If we haven't been here before for this entry (or if we had to
// free it), we'll need a buffer.
if (entry->buffer == NULL) {
entry->bufsize = head->wanted_bufsize;
entry->buffer = (char *)malloc(entry->bufsize);
entry->next_buffer_pos = 0;
inc_stats_read_buffers_allocated(entry->bufsize);
}
// Or if the desired bufsize has increased since we allocated, realloc.
if (entry->bufsize != head->wanted_bufsize) {
uint32_t inc = head->wanted_bufsize - entry->bufsize;
entry->bufsize = head->wanted_bufsize;
entry->buffer = (char *)realloc(entry->buffer, entry->bufsize);
entry->next_buffer_pos = 0;
inc_stats_read_buffers_allocated(inc);
}
if (entry->buffer == NULL) { // LCOV_EXCL_START
printf("error: unable to allocate read buffer, sorry!\n");
exit(1);
} // LCOV_EXCL_STOP
struct block_list_entry * bl = &entry->blocks->entry[entry->next_read_block];
uint64_t current_file_pos = entry->next_read_byte;
uint64_t current_disk_block_start = bl->start_pos;
uint64_t current_disk_block_end = bl->start_pos + bl->len;
// If there is a gap until next available bytes, fill with zeroes as needed
if (current_file_pos < current_disk_block_start) {
uint32_t gap_size = current_disk_block_start - current_file_pos;
uint32_t buf_space = entry->bufsize - entry->next_buffer_pos;
uint32_t zeroes = gap_size;
int filling_buffer = 0;
if (buf_space <= zeroes) {
zeroes = buf_space;
filling_buffer = 1;
}
LOG(L_TRACE, "Gap before in [%s]: gap_size: %" PRIu32 ", buf_space: %"
PRIu32 ", zeroes: %" PRIu32 "\n", path, gap_size, buf_space, zeroes);
memset(entry->buffer + entry->next_buffer_pos, 0, zeroes);
entry->next_buffer_pos += zeroes;
entry->next_read_byte += zeroes;
if (filling_buffer) {
mark_path_entry_ready(head, entry);
entry->data_in_buffer = entry->bufsize;
return rv;
}
current_file_pos = entry->next_read_byte;
}
// LCOV_EXCL_START
if (current_file_pos < current_disk_block_start ||
current_file_pos > current_disk_block_end) {
printf("error: current_file_pos: %" PRIu64 ", current_disk_block_start: %"
PRIu64 ", current_disk_block_end: %" PRIu64 "\n",
current_file_pos, current_disk_block_start, current_disk_block_end);
dump_path_list("", filesize, head, 1);
exit(1);
} // LCOV_EXCL_STOP
// How much can we read now? Limited either by how much left to read in
// current disk block or by how much needed to fill memory buffer.
uint64_t current_disk_block_available =
current_disk_block_end - current_file_pos;
uint32_t buffer_available = entry->bufsize - entry->next_buffer_pos;
uint32_t want_bytes = buffer_available;
int filling_buffer = 1;
int consumed_block = 0;
if (want_bytes >= current_disk_block_available) {
want_bytes = current_disk_block_available;
consumed_block = 1;
}
if (want_bytes < buffer_available) {
filling_buffer = 0;
}
LOG(L_TRACE, "fill_data_block: [%s] current_file_pos: %" PRIu64
", current_disk_block_start: %" PRIu64
", current_disk_block_end: %" PRIu64
", current_disk_block_available: %" PRIu64
", buffer_available: %" PRIu32 ", want_bytes: %" PRIu32
", filling_buffer: %d\n",
path, current_file_pos, current_disk_block_start, current_disk_block_end,
current_disk_block_available, buffer_available, want_bytes,
filling_buffer);
uint64_t bytes_read = 0;
uint64_t t1 = get_current_time_millis();
read_entry_bytes(entry, filesize, path,
entry->buffer + entry->next_buffer_pos,
want_bytes, current_file_pos, &bytes_read);
uint64_t took = get_current_time_millis() - t1;
if (bytes_read != want_bytes) {
// File may be unreadable or changed size, either way, ignore it.
LOG(L_PROGRESS, "error: read %" PRIu64 " bytes from [%s] but wanted %"
PRIu32 " (%s)\n", bytes_read, path, want_bytes, strerror(errno));
int before = head->list_size;
int after = mark_path_entry_invalid(head, entry);
int additional = before - 1 - after;
if (additional > 0) {
LOG(L_SKIPPED, "Defaulting %d additional files as unique\n", additional);
increase_unique_counter(additional);
}
} else {
entry->next_read_byte += bytes_read;
entry->next_buffer_pos += bytes_read;
if (consumed_block) {
rv = 1;
entry->next_read_block++;
if (entry->next_read_block < entry->blocks->count) {
uint64_t next_available_byte =
entry->blocks->entry[entry->next_read_block].start_pos;
// If file has a gap after current position, fill with zeroes as needed
if (next_available_byte > entry->next_read_byte) {
LOG(L_TRACE, "GAP next_available_byte: %" PRIu64
", entry->next_read_byte: %" PRIu64 "\n",
next_available_byte, entry->next_read_byte);
uint32_t gap_size = next_available_byte - entry->next_read_byte;
uint32_t buf_space = entry->bufsize - entry->next_buffer_pos;
uint32_t zeroes = gap_size;
if (buf_space < zeroes) {
zeroes = buf_space;
filling_buffer = 1;
}
LOG(L_TRACE, "Gap after in [%s]: gap_size: %" PRIu32 ", buf_space: %"
PRIu32 ", zeroes: %" PRIu32 "\n",
path, gap_size, buf_space, zeroes);
memset(entry->buffer + entry->next_buffer_pos, 0, zeroes);
entry->next_buffer_pos += zeroes;
entry->next_read_byte += zeroes;
}
} else {
LOG(L_TRACE, "File completed [%s]\n", path);
}
}
if (entry->next_read_byte >= filesize) {
mark_path_entry_ready(head, entry);
entry->data_in_buffer = entry->next_buffer_pos;
head->sizelist->fully_read = 1;
} else if (filling_buffer) {
mark_path_entry_ready(head, entry);
entry->data_in_buffer = entry->bufsize;
}
read_count++;
int new_avg = avg_read_time + (took - avg_read_time) / read_count;
avg_read_time = new_avg;
LOG(L_TRACE, " read took %" PRIu64 "ms (count=%d avg=%d)\n",
took, read_count, avg_read_time);
}
return rv;
}
/** ***************************************************************************
* Reader thread.
*
* This thread reads bytes from disk in readlist order (not by sizelist group)
* and stores the data in the pathlist buffer for each file.
*
* Parameters: none
*
* Return: none
*
*/
static void * read_list_reader(void * arg)
{
char * self = " [RL-reader] ";
struct size_list * sizelist;
struct read_list_entry * rlentry;
uint64_t size;
int rlpos = 0;
int done;
int needy;
int done_files = 0;
int waiting_hash;
int loop = 0;
int submit_this_one;
int invalid;
int did_something;
struct path_list_entry * pathlist_entry;
struct path_list_head * pathlist_head;
char path[DUPD_PATH_MAX];
struct hasher_param * hasher_info = (struct hasher_param *)arg;
int next_queue = 0;
uint8_t block;
int bfpct;
useconds_t sleepy_time = 1;
pthread_setspecific(thread_name, self);
LOG(L_THREADS, "Thread created\n");
if (read_list_end == 0) { // LCOV_EXCL_START
LOG(L_INFO, "readlist is empty, nothing to read\n");
return NULL;
} // LCOV_EXCL_STOP
do {
rlpos = 0;
needy = 0;
done_files = 0;
waiting_hash = 0;
invalid = 0;
did_something = 0;
loop++;
LOG(L_THREADS, "Starting read list loop %d\n", loop);
do {
rlentry = &read_list[rlpos];
if (rlentry->done) {
rlpos++;
done_files++;
continue;
}
pathlist_head = rlentry->pathlist_head;
pathlist_entry = rlentry->pathlist_self;
sizelist = pathlist_head->sizelist;
submit_this_one = 0;
d_mutex_lock(&sizelist->lock, "process_readlist");
switch (pathlist_entry->state) {
case FS_NEED_DATA:
needy++;
// Is this read list entry the block this path wants to read?
block = pathlist_entry->next_read_block;
if (pathlist_entry->blocks->entry[block].block == rlentry->block) {
build_path(pathlist_entry, path);
size = sizelist->size;
LOG(L_MORE_THREADS, "[%d] Entry %d (%d files of size %" PRIu64
" in state %s): (reading pos %" PRIu64 " block %d) %s\n",
loop, rlpos, pathlist_head->list_size, size,
file_state(pathlist_entry->state),
pathlist_entry->next_read_byte, block, path);
if (fill_data_block(pathlist_head, pathlist_entry, path)) {
rlentry->done = 1;
}
did_something++;
if (pathlist_head->state == PLS_ALL_BUFFERS_READY) {
submit_this_one = 1;
}
}
break;
case FS_DONE:
done_files++;
break;
case FS_BUFFER_READY:
waiting_hash++;
break;
case FS_INVALID:
done_files++;
invalid++;
break;
default: // LCOV_EXCL_START
dump_path_list("read list reader, unexpected state",
pathlist_head->sizelist->size, pathlist_head, 1);
exit(1);
} // LCOV_EXCL_STOP
d_mutex_unlock(&sizelist->lock);
if (submit_this_one) {
submit_path_list(next_queue, pathlist_head, hasher_info);
next_queue = (next_queue + 1) % HASHER_THREADS;
}
rlpos++;
bfpct = (int)(100 * stats_read_buffers_allocated / buffer_limit);
if (bfpct > 99) {
LOG(L_THREADS, "Buffer usage %d, flushing...\n", bfpct);
size_list_flusher(hasher_info);
}
} while (rlpos < read_list_end);
LOG(L_THREADS, "Completed loop %d: list size: %d worked: %d "
"(NEED_DATA %d, NEED_HASH %d, INVALID %d, DONE %d)\n",
loop, rlpos, did_something, needy, waiting_hash, invalid, done_files);
done = done_files >= rlpos;
if (!done) {
if (!did_something) {
sleepy_time *= 2;
usleep(sleepy_time);
LOG(L_MORE_TRACE, "Sleeping before next loop %d\n", sleepy_time);
} else {
sleepy_time = 1;
}
}
} while (!done);
LOG(L_MORE_INFO, "DONE read list reader (%d loops)\n", loop);
return NULL;
}
/** ***************************************************************************
* Public function, see header file.
*
*/
void init_size_list()
{
size_list_head = NULL;
size_list_tail = NULL;
s_stats_size_list_count = 0;
stats_size_list_avg = 0;
}
/** ***************************************************************************
* Public function, see header file.
*
*/
struct size_list * add_to_size_list(uint64_t size,
struct path_list_head * path_list)
{
stats_size_list_avg = stats_size_list_avg +
( (size - stats_size_list_avg) / (s_stats_size_list_count + 1) );
if (size_list_head == NULL) {
size_list_head = new_size_list_entry(size, path_list);
size_list_tail = size_list_head;
s_stats_size_list_count = 1;
return size_list_head;
}
struct size_list * new_entry = new_size_list_entry(size, path_list);
size_list_tail->next = new_entry;
size_list_tail = size_list_tail->next;
s_stats_size_list_count++;
return new_entry;
}
/** ***************************************************************************
* Public function, see header file.
*
*/
void free_size_list()
{
if (size_list_head != NULL) {
struct size_list * p = size_list_head;
struct size_list * me = size_list_head;
while (p != NULL) {
p = p->next;
pthread_mutex_destroy(&me->lock);
free(me);
me = p;
}
}
}
/** ***************************************************************************
* Public function, see header file.
*
*/
void process_size_list(sqlite3 * dbh)
{
pthread_t reader_thread;
struct hasher_param hasher_info[HASHER_THREADS];
int initial_size = 50;
if (size_list_head == NULL) {
return;
}
if (x_small_buffers) { initial_size = 2; }
for (int n = 0; n < HASHER_THREADS; n++) {
hasher_info[n].thread_num = n;
hasher_info[n].done = 0;
hasher_info[n].dbh = dbh;
pthread_mutex_init(&hasher_info[n].queue_lock, NULL);
pthread_cond_init(&hasher_info[n].queue_cond, NULL);
hasher_info[n].queue_pos = -1;
hasher_info[n].size = initial_size;
hasher_info[n].queue =
(struct path_list_head **)malloc(initial_size *
sizeof(struct path_list_head *));
for (int i = 0; i < initial_size; i++) {
hasher_info[n].queue[i] = NULL;
}
}
stats_process_start = get_current_time_millis();
// Start file reader thread
LOG(L_THREADS, "Starting file reader thread...\n");
d_create(&reader_thread, read_list_reader, &hasher_info);
// Meanwhile, the size tree is no longer needed, so free it. Might
// as well do it while this thread has nothing else to do but wait.
free_size_tree();
usleep(10000);
// Start hasher threads and then wait for them to finish...
LOG(L_THREADS, "Starting %d threads...\n", HASHER_THREADS);
for (int n = 0; n < HASHER_THREADS; n++) {
d_create(&hasher_info[n].thread, round1_hasher, &hasher_info[n]);
}
LOG(L_THREADS, "process_size_list: waiting for workers to finish\n");
d_join(reader_thread, NULL);
LOG(L_THREADS, "process_size_list: joined reader thread\n");
signal_hashers(hasher_info);
for (int n = 0; n < HASHER_THREADS; n++) {
d_join(hasher_info[n].thread, NULL);
LOG(L_THREADS, "process_size_list: joined hasher thread %d\n", n);
}
long now = get_current_time_millis();
stats_process_duration = now - stats_process_start;
// LCOV_EXCL_START
if (stats_read_buffers_allocated != 0) {
printf("error: after round1 complete, buffers: %" PRIu64 "\n",
stats_read_buffers_allocated);
dump_size_list();
exit(1);
}
if (current_open_files != 0) {
printf("error: after processing complete, open files: %d\n",
current_open_files);
dump_size_list();
exit(1);
}
// LCOV_EXCL_STOP
for (int n = 0; n < HASHER_THREADS; n++) {
free(hasher_info[n].queue);
}
}
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