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PACKAGE_VERSION=$(shell dpkg-parsechangelog | egrep '^Version:' | cut -f 2 -d ' ')
CC ?= gcc
CFLAGS += -Wall -O3 -I.
CPPFLAGS += -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\"${PACKAGE_VERSION}\"
PROG = dwgsim
DWGSIM_AOBJS = src/dwgsim_opt.o \
src/mut.o \
src/contigs.o \
src/regions_bed.o \
src/mut_txt.o \
src/mut_bed.o \
src/mut_vcf.o \
src/mut_input.o \
src/dwgsim.o
.SUFFIXES:.c .o
.PHONY:all clean cleanlocal
.c.o:
$(CC) -c $(CFLAGS) $(CPPFLAGS) $< -o $@
all:$(PROG)
dwgsim: $(DWGSIM_AOBJS)
$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(DWGSIM_AOBJS) -lm -lz -lpthread
cleanlocal:
rm -vfr gmon.out *.o a.out *.exe *.dSYM razip bgzip $(PROG) *~ *.a *.so.* *.so *.dylib;
clean:cleanlocal
test:
if [ -d tmp ]; then rm -r tmp; fi
/bin/bash testdata/test.sh
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