1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
|
Welcome to DWGSIM
=== Prerequisites ===
If you have just cloned this repository using GIT, you must
initialize the SAMtools sub-module:
git submodule init
git submodule update
You should now have the SAMtools-compatible version checked
out in the samtools sub-directory.
=== Building DWGSIM ===
To build DWGSIM, execute the following commands:
make
To install DWGSIM, after building, copy the following binaries
to their appropriate installation directories:
dwgsim
dwgsim_eval
dwgims_pileup_eval.pl
=== DWGSIM with Galaxy ===
DWGSIM can be incorporated into galaxy.
NB: this is out-of-date.
1. Copy over the wrapper scripts:
cp scripts/galaxy/dwgsim_wrapper.* galaxy-dist/tools/sr_mapping
2. Add to the list of available tools.
2a. Open galaxy-dist/tool_conf.xml
2b. At the end of the NGS: mapping section, add the following:
<tool file="sr_mapping/dwgsim_wrapper.xml" />
|
