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function [theta, fxsim, neval, sampler_options] = slice_sampler(objective_function,theta,thetaprior,sampler_options,varargin)
% [theta, fxsim, neval, sampler_options] = slice_sampler(objective_function,theta,thetaprior,sampler_options,varargin)
% ----------------------------------------------------------
% UNIVARIATE SLICE SAMPLER - stepping out (Neal, 2003)
% W: optimal value in the range (3,10)*std(x)
% - see C.Planas and A.Rossi (2014)
% objective_function(theta,varargin): -log of any unnormalized pdf
% with varargin (optional) a vector of auxiliary parameters
% to be passed to f( ).
% ----------------------------------------------------------
%
% INPUTS
% objective_function: objective function (expressed as minus the log of a density)
% theta: last value of theta
% thetaprior: bounds of the theta space
% sampler_options: posterior sampler options
% varargin: optional input arguments to objective function
%
% OUTPUTS
% theta: new theta sample
% fxsim: value of the objective function for the new sample
% neval: number of function evaluations
% sampler_options: posterior sampler options
%
% SPECIAL REQUIREMENTS
% none
% Copyright © 2015-2026 Dynare Team
%
% This file is part of Dynare.
%
% Dynare is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% Dynare is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Dynare. If not, see <https://www.gnu.org/licenses/>.
endo_init_state = false;
draw_endo_init_state_from_smoother=false;
draw_endo_init_state_with_rotated_slice = false;
if isfield(sampler_options,'draw_init_state_with_rotated_slice') && sampler_options.draw_init_state_with_rotated_slice
endo_init_state = true;
draw_endo_init_state_with_rotated_slice = true;
end
if isfield(sampler_options,'draw_init_state_from_smoother') && sampler_options.draw_init_state_from_smoother
endo_init_state = true;
draw_endo_init_state_from_smoother=true;
end
if endo_init_state
[index_init_state, IS, index_deep_parameters] = get_init_state_estim_params(varargin{4}, varargin{6}, varargin{8});
thetaprior(index_init_state,1) = theta(index_init_state);
thetaprior(index_init_state,2) = theta(index_init_state);
end
if sampler_options.rotated %&& ~isempty(sampler_options.V1),
sampler_options.endo_init_state.status = endo_init_state;
if endo_init_state
sampler_options.endo_init_state.IB = index_init_state;
sampler_options.endo_init_state.IP = index_deep_parameters;
end
[theta, fxsim, neval] = rotated_slice_sampler(objective_function,theta,thetaprior,sampler_options,varargin{:});
if endo_init_state
% draw initial states
if draw_endo_init_state_from_smoother
[theta, fxsim, ~, ~, neval_init] = draw_init_state_from_smoother([false 5],sampler_options,theta,fxsim,thetaprior,varargin{:});
if ~isempty(index_init_state)
neval(index_init_state(1)) = neval(index_init_state(1)) + neval_init;
else
neval(1) = neval(1) + neval_init;
end
elseif draw_endo_init_state_with_rotated_slice
[V, D]=get_init_state_prior(theta,varargin{3:end});
% take eigenvectors of state priors and set zero wieghts for other
% params
nslice = size(V,2);
V=V(IS,:);
V1 = zeros(length(theta),size(V,2));
V1(index_init_state,:) = V;
sampler_options.V1=V1;
stderr = sqrt(diag(D));
sampler_options.WR=stderr*3;
for k=1:nslice
bounds.lb(k) = norminv(1e-10, 0, stderr(k));
bounds.ub(k) = norminv(1-1e-10, 0, stderr(k));
end
sampler_options.rthetaprior=[bounds.lb(:) bounds.ub(:)];
% here params are fixed, so no need to account for change in
% state prior!
sampler_options.endo_init_state.status = false;
% sampler_options.WR=sampler_options.initial_step_size*(bounds.ub-bounds.lb);
[theta, fxsim, neval1] = rotated_slice_sampler(objective_function,theta,thetaprior,sampler_options,varargin{:});
[~, icheck]=set_init_state(theta,varargin{3:end});
neval(index_init_state(1:nslice)) = neval1(1:nslice);
end
end
if isempty(sampler_options.mode) % jumping
return
else
nevalR=sum(neval);
end
end
thetaprior0=thetaprior;
if isfield(sampler_options,'fast_likelihood_evaluation_for_rejection') && sampler_options.fast_likelihood_evaluation_for_rejection
fast_likelihood_evaluation_for_rejection = true;
rejection_penalty=sampler_options.fast_likelihood_evaluation_for_rejection_penalty;
else
fast_likelihood_evaluation_for_rejection = false;
end
use_prior_draws = false;
if isfield(sampler_options,'use_prior_draws') && sampler_options.use_prior_draws.status
use_prior_draws = sampler_options.use_prior_draws.status;
try_prior_draws = sampler_options.use_prior_draws.mh_blck(sampler_options.curr_block);
end
theta=theta(:);
npar = length(theta);
W1 = sampler_options.W1;
neval = zeros(npar,1);
fname = [ int2str(sampler_options.curr_block)];
Prior = dprior(varargin{6},varargin{3}.prior_trunc);
if use_prior_draws && try_prior_draws
fxsim = sampler_options.last_posterior;
Z1 = fxsim + log(rand(1,1));
ilogpo2=-inf;
nattempts=0;
while ilogpo2<Z1 && nattempts<10
nattempts=nattempts+1;
validate=false;
while not(validate)
candidate = Prior.draw();
if all(candidate >= thetaprior0(:,1)) && all(candidate <= thetaprior0(:,2))
if fast_likelihood_evaluation_for_rejection
itest = -rejection_objective_function(objective_function,theta,Z1-rejection_penalty,varargin{:});
else
itest = -feval(objective_function,candidate,varargin{:});
end
if isfinite(itest)
validate=true;
end
end
end
if itest>ilogpo2
ilogpo2= itest;
best_candidate = candidate;
end
end
if ilogpo2>=Z1
theta= best_candidate;
fxsim = ilogpo2;
else
% prior draw is worse than current draw, so I stop drawing from
% prior in this chain
sampler_options.use_prior_draws.mh_blck(sampler_options.curr_block)=false;
end
end
it=0;
islow=false(npar,1);
while it<npar
it=it+1;
neval(it) = 0;
W = W1(it);
xold = theta(it);
theta0=theta;
XLB = thetaprior(it,1);
XUB = thetaprior(it,2);
if XLB==XUB
continue
end
% -------------------------------------------------------
% 1. DRAW Z = ln[f(X0)] - EXP(1) where EXP(1)=-ln(U(0,1))
% THIS DEFINES THE SLICE S={x: z < ln(f(x))}
% -------------------------------------------------------
fxold = -feval(objective_function,theta,varargin{:});
if endo_init_state
ys0 = get_steady_state(theta,varargin{3:end});
end
if ~isfinite(fxold)
disp(['slice_sampler:: Iteration ' int2str(it) ' started with bad parameter set (fval is inf or nan)'])
icount=0;
while ~isfinite(fxold) && icount<1000
icount=icount+1;
theta = Prior.draw();
if all(theta >= thetaprior(:,1)) && all(theta <= thetaprior(:,2))
fxold = -feval(objective_function,theta,varargin{:});
end
end
% restart from 1
it = 1;
neval(it) = 0;
W = W1(it);
xold = theta(it);
XLB = thetaprior(it,1);
XUB = thetaprior(it,2);
end
neval(it) = neval(it) + 1;
Z = fxold + log(rand(1,1));
% -------------------------------------------------------------
% 2. FIND I=(L,R) AROUND X0 THAT CONTAINS S AS MUCH AS POSSIBLE
% STEPPING-OUT PROCEDURE
% -------------------------------------------------------------
u = rand(1,1);
L = max(XLB,xold-W*u);
R = min(XUB,L+W);
mytxt{it,1} = '';
while(L > XLB)
xsim = L;
theta(it) = xsim;
if endo_init_state
theta0(it) = xsim;
[theta, icheck]=set_init_state(theta0,ys0,varargin{3:end});
end
if fast_likelihood_evaluation_for_rejection
fxl = -rejection_objective_function(objective_function,theta,Z-rejection_penalty,varargin{:});
else
fxl = -feval(objective_function,theta,varargin{:});
end
neval(it) = neval(it) + 1;
if (fxl <= Z)
break
end
L = max(XLB,L-W);
if neval(it)>30
L=XLB;
xsim = L;
theta(it) = xsim;
if endo_init_state
theta0(it) = xsim;
[theta, icheck]=set_init_state(theta0,varargin{3:end});
end
fxl = -feval(objective_function,theta,varargin{:});
icount = 0;
while (isinf(fxl) || isnan(fxl)) && icount<300
icount = icount+1;
L=L+sqrt(eps);
xsim = L;
theta(it) = xsim;
if endo_init_state
theta0(it) = xsim;
[theta, icheck]=set_init_state(theta0,varargin{3:end});
end
fxl = -feval(objective_function,theta,varargin{:});
end
mytxt{it,1} = sprintf('Getting L for [%s] is taking too long.', varargin{6}.name{it});
if sampler_options.save_iter_info_file
save([varargin{4}.dname filesep 'metropolis/slice_iter_info_' fname],'mytxt','neval','it','theta','fxl')
end
end
end
neval1 = neval(it);
mytxt{it,2} = '';
while(R < XUB)
xsim = R;
theta(it) = xsim;
if endo_init_state
theta0(it) = xsim;
[theta, icheck]=set_init_state(theta0,ys0,varargin{3:end});
end
if fast_likelihood_evaluation_for_rejection
fxr = -rejection_objective_function(objective_function,theta,Z-rejection_penalty,varargin{:});
else
fxr = -feval(objective_function,theta,varargin{:});
end
neval(it) = neval(it) + 1;
if (fxr <= Z)
break
end
R = min(XUB,R+W);
if neval(it)>(neval1+30)
R=XUB;
xsim = R;
theta(it) = xsim;
if endo_init_state
theta0(it) = xsim;
[theta, icheck]=set_init_state(theta0,ys0,varargin{3:end});
end
fxr = -feval(objective_function,theta,varargin{:});
icount = 0;
while (isinf(fxr) || isnan(fxr)) && icount<300
icount = icount+1;
R=R-sqrt(eps);
xsim = R;
theta(it) = xsim;
if endo_init_state
theta0(it) = xsim;
[theta, icheck]=set_init_state(theta0,ys0,varargin{3:end});
end
fxr = -feval(objective_function,theta,varargin{:});
end
mytxt{it,2} = sprintf('Getting R for [%s] is taking too long.', varargin{6}.name{it});
if sampler_options.save_iter_info_file
save([varargin{4}.dname filesep 'metropolis/slice_iter_info_' fname],'mytxt','neval','it','theta','fxr')
end
end
end
% ------------------------------------------------------
% 3. SAMPLING FROM THE SET A = (I INTERSECT S) = (LA,RA)
% ------------------------------------------------------
fxsim = Z-1;
mytxt{it,3} = '';
while (fxsim < Z)
u = rand(1,1);
xsim = L + u*(R - L);
theta(it) = xsim;
if endo_init_state
theta0(it) = xsim;
[theta, icheck]=set_init_state(theta0,ys0,varargin{3:end});
end
if fast_likelihood_evaluation_for_rejection
fxsim = -rejection_objective_function(objective_function,theta,Z-rejection_penalty,varargin{:});
else
fxsim = -feval(objective_function,theta,varargin{:});
end
neval(it) = neval(it) + 1;
if (xsim > xold)
R = xsim;
else
L = xsim;
end
if (R-L)<1.e-6 %neval(it)>(30+neval2)
fprintf('The sampling for parameter [%s] is taking too long as the sampling set is too tight. Check the prior.\n', varargin{6}.name{it})
mytxt{it,3} = sprintf('Sampling [%s] is taking too long.', varargin{6}.name{it});
if sampler_options.save_iter_info_file
save([varargin{4}.dname filesep 'metropolis/slice_iter_info_' fname],'mytxt','neval','it')
end
islow(it)=true;
theta(it) = xold;
fxsim = fxold;
break
end
end
if sampler_options.save_iter_info_file
save([varargin{4}.dname filesep 'metropolis/slice_iter_info_' fname],'mytxt','neval','it','theta','fxsim')
end
if isinf(fxsim) || isnan(fxsim)
theta(it) = xold;
fxsim = fxold;
disp('SLICE: posterior density is infinite. Reset values at initial ones.')
end
if endo_init_state && icheck %(icheck || islow)
[theta, fxsim, ~, ~, neval_init] = draw_init_state_from_smoother([false 1],sampler_options,theta,fxsim,thetaprior,varargin{:});
if ~isempty(index_init_state)
neval(index_init_state(1)) = neval(index_init_state(1)) + neval_init;
else
neval(1) = neval(1) + neval_init;
end
end
if isinf(fxsim) || isnan(fxsim)
theta(it) = xold;
fxsim = fxold;
disp('SLICE: posterior density is infinite. Reset values at initial ones.')
end
if sampler_options.save_iter_info_file
save([varargin{4}.dname filesep 'metropolis/slice_iter_info_' fname],'mytxt','neval','it','theta','fxsim')
end
end
if any(islow)
fxsim = -feval(objective_function,theta,varargin{:});
Z1 = fxsim + log(rand(1,1));
ilogpo2=-inf;
nattempts=0;
while ilogpo2<Z1 && nattempts<10
nattempts=nattempts+1;
validate=false;
while not(validate)
candidate = theta;
my_candidate = Prior.draw();
candidate(islow) = my_candidate(islow);
if all(candidate(islow) >= thetaprior(islow,1)) && all(candidate(islow) <= thetaprior(islow,2))
if endo_init_state
init = true;
[candidate] = draw_init_state_from_smoother(init,sampler_options,candidate,nan,thetaprior,varargin{:});
end
itest = -feval(objective_function,candidate,varargin{:});
if isfinite(itest)
validate=true;
end
end
end
if itest>ilogpo2
ilogpo2= itest;
best_candidate = candidate;
end
end
theta= best_candidate;
fxsim = ilogpo2;
end
if endo_init_state
% draw initial states
if draw_endo_init_state_from_smoother
[theta, fxsim, ~, ~, neval_init] = draw_init_state_from_smoother([false 5],sampler_options,theta,fxsim,thetaprior,varargin{:});
if ~isempty(index_init_state)
neval(index_init_state(1)) = neval(index_init_state(1)) + neval_init;
else
neval(1) = neval(1) + neval_init;
end
elseif draw_endo_init_state_with_rotated_slice
[V, D]=get_init_state_prior(theta,varargin{3:end});
% take eigenvectors of state priors and set zero wieghts for other
% params
nslice = size(V,2);
V=V(IS,:);
V1 = zeros(length(theta),size(V,2));
V1(index_init_state,:) = V;
sampler_options.V1=V1;
stderr = sqrt(diag(D));
sampler_options.WR=stderr*3;
for k=1:nslice
bounds.lb(k) = norminv(1e-10, 0, stderr(k));
bounds.ub(k) = norminv(1-1e-10, 0, stderr(k));
end
sampler_options.rthetaprior=[bounds.lb(:) bounds.ub(:)];
% sampler_options.WR=sampler_options.initial_step_size*(bounds.ub-bounds.lb);
[theta, fxsim, neval1] = rotated_slice_sampler(objective_function,theta,thetaprior,sampler_options,varargin{:});
[~, icheck]=set_init_state(theta,ys0,varargin{3:end});
neval(index_init_state(1:nslice)) = neval1(1:nslice);
end
save([varargin{4}.dname filesep 'metropolis/slice_iter_info_' fname],'mytxt','neval','it','theta','fxsim')
end
if sampler_options.rotated && ~isempty(sampler_options.mode) % jumping
neval=sum(neval)+nevalR;
end
function ys = get_steady_state(xparam1, options_,M_,estim_params_,~,~,~, endo_steady_state, exo_steady_state, exo_det_steady_state)
% wrapper function to get steady state
M_ = set_all_parameters(xparam1,estim_params_,M_);
ys = evaluate_steady_state(endo_steady_state,[exo_steady_state; exo_det_steady_state],M_,options_,true);
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