File: run-unit-test

package info (click to toggle)
ea-utils 1.1.2%2Bdfsg-9
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 1,212 kB
  • sloc: ansic: 11,459; cpp: 3,752; perl: 426; makefile: 74; sh: 71
file content (20 lines) | stat: -rw-r--r-- 459 bytes parent folder | download 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
 
#!/bin/bash
set -e

pkg=ea-utils

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"


fastq-mcf adapters.fa data.fastq.gz > output
fastq-stats data.fastq.gz > statistics
[ -s "output" ] && [ -s "statistics" ] || exit 1 && echo "PASS tests"