File: CHANGES

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ea-utils 1.1.2+dfsg-5
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r181	- CASAVA purity filtering
r154	- fixed major bug in RMN's that would invalidate reads
r152	- allowed short adapters to work at the 'begin' of reads
r171	- paired-ends get trimmed like anything else....other behavior was too conservative
r258    - gzip support on input and output, append barcode to unmatched id
r353    - support for dual-indexed nextera reads in fastq-multx, new defaults based on ROC curve analysis
r401    - added -L, included google dir, included build for sam-stats
r408    - updated fast-join docs, changed default mismatch to 8%
r425    - fastq-mcf filtering options, multx verif char fixed
r474    - RNAmode & coverage stats output
r475    - fix paired-end forward/reverse counts
r534    - -S can be before -R, also ver num increment
r551    - eventer -l 0 bug fix, debug output improvement
r558    - sam-stats snp rate change, fastq-lib poorqual N's issue fixed, buffering added (todo: add to lib)