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#
# (C) Copyright 2017- ECMWF.
#
# This software is licensed under the terms of the Apache Licence Version 2.0
# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
#
# In applying this licence, ECMWF does not waive the privileges and immunities
# granted to it by virtue of its status as an intergovernmental organisation nor
# does it submit to any jurisdiction.
#
"""
Tests of the ecCodes Python3 bindings
"""
import os.path
import math
import numpy as np
import pytest
from eccodes import *
SAMPLE_DATA_FOLDER = os.path.join(os.path.dirname(__file__), "sample-data")
TEST_DATA = os.path.join(SAMPLE_DATA_FOLDER, "era5-levels-members.grib")
def get_sample_fullpath(sample):
samples_path = codes_samples_path()
if not os.path.isdir(samples_path):
return None
return os.path.join(samples_path, sample)
# ---------------------------------------------
# ANY PRODUCT
# ---------------------------------------------
def test_codes_definition_path():
df = codes_definition_path()
assert df is not None
def test_codes_samples_path():
sp = codes_samples_path()
assert sp is not None
def test_codes_set_definitions_path():
codes_set_definitions_path(codes_definition_path())
def test_codes_set_samples_path():
codes_set_samples_path(codes_samples_path())
def test_version_info():
vinfo = codes_get_version_info()
assert len(vinfo) == 2
def test_codes_is_defined():
gid = codes_grib_new_from_samples("sh_sfc_grib1")
assert codes_is_defined(gid, "JS")
def test_codes_get_native_type():
gid = codes_grib_new_from_samples("GRIB2")
assert codes_get_native_type(gid, "date") is int
assert codes_get_native_type(gid, "referenceValue") is float
assert codes_get_native_type(gid, "stepType") is str
assert codes_get_native_type(gid, "section_1") is None
with pytest.raises(InvalidGribError):
codes_get_native_type(0, "aKey")
def test_new_from_file():
fpath = get_sample_fullpath("GRIB2.tmpl")
if fpath is None:
return
with open(fpath, "rb") as f:
msgid = codes_new_from_file(f, CODES_PRODUCT_GRIB)
assert msgid
fpath = get_sample_fullpath("BUFR4.tmpl")
with open(fpath, "rb") as f:
msgid = codes_new_from_file(f, CODES_PRODUCT_BUFR)
assert msgid
fpath = get_sample_fullpath("clusters_grib1.tmpl")
with open(fpath, "rb") as f:
msgid = codes_new_from_file(f, CODES_PRODUCT_ANY)
assert msgid
with open(fpath, "rb") as f:
msgid = codes_new_from_file(f, CODES_PRODUCT_GTS)
assert msgid is None
with open(fpath, "rb") as f:
msgid = codes_new_from_file(f, CODES_PRODUCT_METAR)
assert msgid is None
with pytest.raises(ValueError):
with open(fpath, "rb") as f:
codes_new_from_file(f, 1024)
def test_any_read():
fpath = get_sample_fullpath("GRIB1.tmpl")
if fpath is None:
return
with open(fpath, "rb") as f:
msgid = codes_any_new_from_file(f)
assert codes_get(msgid, "edition") == 1
assert codes_get(msgid, "identifier") == "GRIB"
assert codes_get(msgid, "identifier", str) == "GRIB"
codes_release(msgid)
fpath = get_sample_fullpath("BUFR3.tmpl")
with open(fpath, "rb") as f:
msgid = codes_any_new_from_file(f)
assert codes_get(msgid, "edition") == 3
assert codes_get(msgid, "identifier") == "BUFR"
codes_release(msgid)
def test_count_in_file():
fpath = get_sample_fullpath("GRIB1.tmpl")
if fpath is None:
return
with open(fpath, "rb") as f:
assert codes_count_in_file(f) == 1
def test_new_from_message():
gid = codes_grib_new_from_samples("sh_sfc_grib1")
message = codes_get_message(gid)
codes_release(gid)
assert len(message) == 9358
newgid = codes_new_from_message(message)
assert codes_get(newgid, "packingType") == "spectral_complex"
assert codes_get(newgid, "gridType") == "sh"
codes_release(newgid)
# This time read from a string rather than a file
metar_str = "METAR LQMO 022350Z 09003KT 6000 FEW010 SCT035 BKN060 08/08 Q1003="
newgid = codes_new_from_message(metar_str)
cccc = codes_get(newgid, "CCCC")
assert cccc == "LQMO"
codes_release(newgid)
def test_gts_header():
codes_gts_header(True)
codes_gts_header(False)
# ---------------------------------------------
# GRIB
# ---------------------------------------------
def test_grib_read():
gid = codes_grib_new_from_samples("regular_ll_sfc_grib1")
assert codes_get(gid, "Ni") == 16
assert codes_get(gid, "Nj") == 31
assert codes_get(gid, "const") == 1
assert codes_get(gid, "centre", str) == "ecmf"
assert codes_get(gid, "packingType", str) == "grid_simple"
assert codes_get(gid, "gridType", str) == "regular_ll"
codes_release(gid)
gid = codes_grib_new_from_samples("sh_ml_grib2")
assert codes_get(gid, "const") == 0
assert codes_get(gid, "gridType", str) == "sh"
assert codes_get(gid, "typeOfLevel", str) == "hybrid"
assert codes_get_long(gid, "avg") == 185
codes_release(gid)
def test_grib_set_string():
gid = codes_grib_new_from_samples("regular_gg_sfc_grib2")
codes_set(gid, "gridType", "reduced_gg")
codes_release(gid)
def test_grib_set_error():
gid = codes_grib_new_from_samples("regular_ll_sfc_grib1")
with pytest.raises(TypeError):
codes_set_long(gid, "centre", "kwbc")
with pytest.raises(TypeError):
codes_set_double(gid, "centre", "kwbc")
with pytest.raises(CodesInternalError):
codes_set(gid, "centre", [])
def test_grib_write(tmpdir):
gid = codes_grib_new_from_samples("GRIB2")
codes_set(gid, "backgroundProcess", 44)
output = tmpdir.join("test_grib_write.grib")
with open(str(output), "wb") as fout:
codes_write(gid, fout)
codes_release(gid)
def test_grib_codes_set_missing():
gid = codes_grib_new_from_samples("reduced_rotated_gg_ml_grib2")
codes_set(gid, "typeOfFirstFixedSurface", "sfc")
codes_set_missing(gid, "scaleFactorOfFirstFixedSurface")
codes_set_missing(gid, "scaledValueOfFirstFixedSurface")
assert codes_is_missing(gid, "scaleFactorOfFirstFixedSurface")
def test_grib_set_key_vals():
gid = codes_grib_new_from_samples("GRIB2")
# String
codes_set_key_vals(gid, "shortName=z,dataDate=20201112")
assert codes_get(gid, "shortName", str) == "z"
assert codes_get(gid, "date", int) == 20201112
# List
codes_set_key_vals(gid, ["shortName=2t", "dataDate=20191010"])
assert codes_get(gid, "shortName", str) == "2t"
assert codes_get(gid, "date", int) == 20191010
# Dictionary
codes_set_key_vals(gid, {"shortName": "msl", "dataDate": 20181010})
assert codes_get(gid, "shortName", str) == "msl"
assert codes_get(gid, "date", int) == 20181010
codes_release(gid)
def test_grib_get_error():
gid = codes_grib_new_from_samples("regular_ll_sfc_grib2")
# Note: AssertionError can be raised when type checks are enabled
with pytest.raises((ValueError, AssertionError)):
codes_get(gid, None)
def test_grib_get_array():
gid = codes_grib_new_from_samples("reduced_gg_pl_160_grib1")
pl = codes_get_array(gid, "pl")
assert pl[0] == 18
pli = codes_get_array(gid, "pl", int)
assert np.array_equal(pl, pli)
pls = codes_get_array(gid, "centre", str)
assert pls == ["ecmf"]
codes_release(gid)
def test_grib_get_message_size():
gid = codes_grib_new_from_samples("GRIB2")
assert codes_get_message_size(gid) == 179
def test_grib_get_message_offset():
gid = codes_grib_new_from_samples("GRIB2")
assert codes_get_message_offset(gid) == 0
def test_grib_clone():
gid = codes_grib_new_from_samples("GRIB2")
clone = codes_clone(gid)
assert gid
assert clone
assert codes_get(clone, "identifier") == "GRIB"
assert codes_get(clone, "totalLength") == 179
codes_release(gid)
codes_release(clone)
def test_grib_keys_iterator():
gid = codes_grib_new_from_samples("reduced_gg_pl_1280_grib1")
iterid = codes_keys_iterator_new(gid, "ls")
count = 0
while codes_keys_iterator_next(iterid):
keyname = codes_keys_iterator_get_name(iterid)
keyval = codes_get_string(gid, keyname)
assert len(keyval) > 0
count += 1
assert count == 10
codes_keys_iterator_rewind(iterid)
codes_keys_iterator_delete(iterid)
codes_release(gid)
def test_grib_keys_iterator_skip():
gid = codes_grib_new_from_samples("reduced_gg_pl_1280_grib1")
iterid = codes_keys_iterator_new(gid, "ls")
count = 0
codes_skip_computed(iterid)
# codes_skip_coded(iterid)
codes_skip_edition_specific(iterid)
codes_skip_duplicates(iterid)
codes_skip_read_only(iterid)
codes_skip_function(iterid)
while codes_keys_iterator_next(iterid):
keyname = codes_keys_iterator_get_name(iterid)
keyval = codes_get_string(gid, keyname)
assert len(keyval) > 0
count += 1
# centre, level and dataType
assert count == 3
codes_keys_iterator_delete(iterid)
iterid = codes_keys_iterator_new(gid)
count = 0
codes_skip_coded(iterid)
while codes_keys_iterator_next(iterid):
count += 1
assert count == 141
codes_keys_iterator_delete(iterid)
codes_release(gid)
def test_grib_get_data():
gid = codes_grib_new_from_samples("GRIB1")
ggd = codes_grib_get_data(gid)
assert len(ggd) == 65160
codes_release(gid)
gid = codes_grib_new_from_samples("reduced_gg_pl_32_grib2")
ggd = codes_grib_get_data(gid)
assert len(ggd) == 6114
elem1 = ggd[0] # This is a 'Bunch' derived off dict
assert "lat" in elem1.keys()
assert "lon" in elem1.keys()
assert "value" in elem1.keys()
codes_release(gid)
def test_grib_get_double_element():
gid = codes_grib_new_from_samples("gg_sfc_grib2")
elem = codes_get_double_element(gid, "values", 1)
assert math.isclose(elem, 259.9865, abs_tol=0.001)
def test_grib_get_double_elements():
gid = codes_grib_new_from_samples("gg_sfc_grib1")
values = codes_get_values(gid)
num_vals = len(values)
indexes = [0, int(num_vals / 2), num_vals - 1]
elems = codes_get_double_elements(gid, "values", indexes)
assert math.isclose(elems[0], 259.6935, abs_tol=0.001)
assert math.isclose(elems[1], 299.9064, abs_tol=0.001)
assert math.isclose(elems[2], 218.8146, abs_tol=0.001)
elems2 = codes_get_elements(gid, "values", indexes)
assert elems == elems2
def test_grib_geoiterator():
gid = codes_grib_new_from_samples("reduced_gg_pl_256_grib2")
iterid = codes_grib_iterator_new(gid, 0)
i = 0
while 1:
result = codes_grib_iterator_next(iterid)
if not result:
break
[lat, lon, value] = result
assert -90.0 < lat < 90.00
assert 0.0 <= lon < 360.0
assert math.isclose(value, 1.0, abs_tol=0.001)
i += 1
assert i == 348528
codes_grib_iterator_delete(iterid)
codes_release(gid)
def test_grib_nearest():
gid = codes_grib_new_from_samples("reduced_gg_ml_grib2")
lat, lon = 30, -20
nearest = codes_grib_find_nearest(gid, lat, lon)[0]
assert nearest.index == 1770
lat, lon = 10, 0
nearest = codes_grib_find_nearest(gid, lat, lon)[0]
assert nearest.index == 2545
lat, lon = 10, 20
nearest = codes_grib_find_nearest(gid, lat, lon, False, 4)
expected_indexes = (2553, 2552, 2425, 2424)
returned_indexes = (
nearest[0].index,
nearest[1].index,
nearest[2].index,
nearest[3].index,
)
assert sorted(expected_indexes) == sorted(returned_indexes)
# Cannot do more than 4 nearest neighbours
with pytest.raises(ValueError):
codes_grib_find_nearest(gid, lat, lon, False, 5)
codes_release(gid)
def test_grib_nearest_multiple():
gid = codes_new_from_samples("reduced_gg_ml_grib2", CODES_PRODUCT_GRIB)
inlats = (30, 13)
inlons = (-20, 234)
is_lsm = False
nearest = codes_grib_find_nearest_multiple(gid, is_lsm, inlats, inlons)
codes_release(gid)
assert nearest[0].index == 1770
assert nearest[1].index == 2500
def test_grib_ecc_1042():
# Issue ECC-1042: Python3 interface writes integer arrays incorrectly
gid = codes_grib_new_from_samples("regular_ll_sfc_grib2")
# Trying write with inferred dtype
write_vals = np.array([1, 2, 3])
codes_set_values(gid, write_vals)
read_vals = codes_get_values(gid)
length = len(read_vals)
assert read_vals[0] == 1
assert read_vals[length - 1] == 3
# Trying write with explicit dtype
write_vals = np.array(
[
1,
2,
3,
],
dtype=np.float,
)
codes_set_values(gid, write_vals)
read_vals = codes_get_values(gid)
assert read_vals[0] == 1
assert read_vals[length - 1] == 3
codes_release(gid)
def test_grib_ecc_1007():
# Issue ECC-1007: Python3 interface cannot write large arrays
gid = codes_grib_new_from_samples("regular_ll_sfc_grib2")
numvals = 1501 * 1501
values = np.zeros((numvals,))
values[0] = 12 # Make sure it's not a constant field
codes_set_values(gid, values)
maxv = eccodes.codes_get(gid, "max")
minv = eccodes.codes_get(gid, "min")
assert minv == 0
assert maxv == 12
codes_release(gid)
def test_grib_float_array():
gid = codes_grib_new_from_samples("regular_ll_sfc_grib2")
for ftype in (float, np.float16, np.float32, np.float64):
values = np.ones((100000,), ftype)
codes_set_array(gid, "values", values)
assert (codes_get_values(gid) == 1.0).all()
codes_set_values(gid, values)
assert (codes_get_values(gid) == 1.0).all()
def test_gribex_mode():
codes_gribex_mode_on()
codes_gribex_mode_off()
def test_grib_new_from_samples_error():
with pytest.raises(FileNotFoundError):
codes_new_from_samples("poopoo", CODES_PRODUCT_GRIB)
def test_grib_new_from_file_error(tmp_path):
# Note: AssertionError can be raised when type checks are enabled
with pytest.raises((TypeError, AssertionError)):
codes_grib_new_from_file(None)
p = tmp_path / "afile.txt"
p.write_text("GRIBxxxx")
with open(p, "rb") as f:
with pytest.raises(UnsupportedEditionError):
codes_grib_new_from_file(f)
def test_grib_index_new_from_file(tmpdir):
fpath = get_sample_fullpath("GRIB1.tmpl")
if fpath is None:
return
index_keys = ["shortName", "level", "number", "step"]
iid = codes_index_new_from_file(fpath, index_keys)
index_file = str(tmpdir.join("temp.grib.index"))
codes_index_write(iid, index_file)
key = "level"
assert codes_index_get_size(iid, key) == 1
assert codes_index_get(iid, key) == ("500",)
codes_index_select(iid, "level", 500)
codes_index_select(iid, "shortName", "z")
codes_index_select(iid, "number", 0)
codes_index_select(iid, "step", 0)
gid = codes_new_from_index(iid)
assert codes_get(gid, "edition") == 1
assert codes_get(gid, "totalLength") == 107
codes_release(gid)
codes_index_release(iid)
iid2 = codes_index_read(index_file)
assert codes_index_get(iid2, "shortName") == ("z",)
codes_index_release(iid2)
def test_grib_multi_support_reset_file():
# TODO: read an actual multi-field GRIB here
fpath = get_sample_fullpath("GRIB2.tmpl")
if fpath is None:
return
codes_grib_multi_support_on()
with open(fpath, "rb") as f:
codes_grib_multi_support_reset_file(f)
codes_grib_multi_support_off()
def test_grib_uuid_get_set():
# ECC-1167
gid = codes_grib_new_from_samples("GRIB2")
codes_set(gid, "gridType", "unstructured_grid")
uuid = codes_get_string(gid, "uuidOfHGrid")
assert uuid == "00000000000000000000000000000000"
codes_set_string(gid, "uuidOfHGrid", "DEfdBEef10203040b00b1e50001100FF")
uuid = codes_get_string(gid, "uuidOfHGrid")
assert uuid == "defdbeef10203040b00b1e50001100ff"
codes_release(gid)
# ---------------------------------------------
# BUFR
# ---------------------------------------------
def test_bufr_read_write(tmpdir):
bid = codes_new_from_samples("BUFR4", CODES_PRODUCT_BUFR)
codes_set(bid, "unpack", 1)
assert codes_get(bid, "typicalYear") == 2012
assert codes_get(bid, "centre", str) == "ecmf"
codes_set(bid, "totalSunshine", 13)
codes_set(bid, "pack", 1)
output = tmpdir.join("test_bufr_write.bufr")
with open(str(output), "wb") as fout:
codes_write(bid, fout)
assert codes_get(bid, "totalSunshine") == 13
codes_release(bid)
def test_bufr_encode(tmpdir):
ibufr = codes_bufr_new_from_samples("BUFR3_local_satellite")
codes_set_array(ibufr, "inputDelayedDescriptorReplicationFactor", (4,))
codes_set(ibufr, "masterTableNumber", 0)
codes_set(ibufr, "bufrHeaderSubCentre", 0)
codes_set(ibufr, "bufrHeaderCentre", 98)
codes_set(ibufr, "updateSequenceNumber", 0)
codes_set(ibufr, "dataCategory", 12)
codes_set(ibufr, "dataSubCategory", 139)
codes_set(ibufr, "masterTablesVersionNumber", 13)
codes_set(ibufr, "localTablesVersionNumber", 1)
codes_set(ibufr, "numberOfSubsets", 492)
codes_set(ibufr, "localNumberOfObservations", 492)
codes_set(ibufr, "satelliteID", 4)
codes_set(ibufr, "observedData", 1)
codes_set(ibufr, "compressedData", 1)
codes_set(ibufr, "unexpandedDescriptors", 312061)
codes_set(ibufr, "pixelSizeOnHorizontal1", 1.25e04)
codes_set(ibufr, "orbitNumber", 31330)
codes_set(ibufr, "#1#beamIdentifier", 1)
codes_set(ibufr, "#4#likelihoodComputedForSolution", CODES_MISSING_DOUBLE)
codes_set(ibufr, "pack", 1)
output = tmpdir.join("test_bufr_encode.bufr")
with open(str(output), "wb") as fout:
codes_write(ibufr, fout)
codes_release(ibufr)
def test_bufr_set_float():
ibufr = codes_bufr_new_from_samples("BUFR4")
codes_set(ibufr, "unpack", 1)
codes_set(ibufr, "totalPrecipitationPast24Hours", np.float32(1.26e04))
codes_set(ibufr, "totalPrecipitationPast24Hours", np.float16(1.27e04))
codes_release(ibufr)
def test_bufr_set_string_array():
ibufr = codes_bufr_new_from_samples("BUFR3_local_satellite")
codes_set(ibufr, "numberOfSubsets", 3)
codes_set(ibufr, "unexpandedDescriptors", 307022)
inputVals = ("ARD2-LPTR", "EPFL-LPTR", "BOU2-LPTR")
codes_set_array(ibufr, "stationOrSiteName", inputVals)
codes_set(ibufr, "pack", 1)
outputVals = codes_get_string_array(ibufr, "stationOrSiteName")
assert len(outputVals) == 3
assert outputVals[0] == "ARD2-LPTR"
assert outputVals[1] == "EPFL-LPTR"
assert outputVals[2] == "BOU2-LPTR"
codes_release(ibufr)
def test_bufr_keys_iterator():
bid = codes_bufr_new_from_samples("BUFR3_local_satellite")
# Header keys only
iterid = codes_bufr_keys_iterator_new(bid)
count = 0
while codes_bufr_keys_iterator_next(iterid):
keyname = codes_bufr_keys_iterator_get_name(iterid)
assert "#" not in keyname
count += 1
# assert count == 54
codes_set(bid, "unpack", 1)
codes_bufr_keys_iterator_rewind(iterid)
count = 0
while codes_bufr_keys_iterator_next(iterid):
keyname = codes_bufr_keys_iterator_get_name(iterid)
count += 1
# assert count == 157
codes_bufr_keys_iterator_rewind(iterid)
codes_bufr_keys_iterator_delete(iterid)
codes_release(bid)
def test_bufr_codes_is_missing():
bid = codes_bufr_new_from_samples("BUFR4_local")
codes_set(bid, "unpack", 1)
assert codes_is_missing(bid, "heightOfBarometerAboveMeanSeaLevel") == 1
assert codes_is_missing(bid, "blockNumber") == 1
assert codes_is_missing(bid, "stationOrSiteName") == 1
assert codes_is_missing(bid, "unexpandedDescriptors") == 0
assert codes_is_missing(bid, "ident") == 0
codes_set(bid, "stationOrSiteName", "Barca")
codes_set(bid, "pack", 1)
assert codes_is_missing(bid, "stationOrSiteName") == 0
codes_release(bid)
def test_bufr_multi_element_constant_arrays():
codes_bufr_multi_element_constant_arrays_off()
bid = codes_bufr_new_from_samples("BUFR3_local_satellite")
codes_set(bid, "unpack", 1)
assert codes_get_size(bid, "satelliteIdentifier") == 1
codes_release(bid)
codes_bufr_multi_element_constant_arrays_on()
bid = codes_bufr_new_from_samples("BUFR3_local_satellite")
codes_set(bid, "unpack", 1)
numSubsets = codes_get(bid, "numberOfSubsets")
assert codes_get_size(bid, "satelliteIdentifier") == numSubsets
codes_release(bid)
def test_bufr_new_from_samples_error():
with pytest.raises(FileNotFoundError):
codes_new_from_samples("nonExistentSample", CODES_PRODUCT_BUFR)
with pytest.raises(ValueError):
codes_new_from_samples("BUFR3_local", 1024)
def test_bufr_get_message_size():
gid = codes_bufr_new_from_samples("BUFR3_local")
assert codes_get_message_size(gid) == 279
def test_bufr_get_message_offset():
gid = codes_bufr_new_from_samples("BUFR3_local")
assert codes_get_message_offset(gid) == 0
# Experimental features
def test_codes_bufr_key_is_header():
bid = codes_bufr_new_from_samples("BUFR4_local_satellite")
assert codes_bufr_key_is_header(bid, "edition")
assert codes_bufr_key_is_header(bid, "satelliteID")
assert codes_bufr_key_is_header(bid, "unexpandedDescriptors")
with pytest.raises(KeyValueNotFoundError):
codes_bufr_key_is_header(bid, "satelliteSensorIndicator")
codes_set(bid, "unpack", 1)
assert not codes_bufr_key_is_header(bid, "satelliteSensorIndicator")
assert not codes_bufr_key_is_header(bid, "#6#brightnessTemperature")
def test_extract_offsets():
fpath = get_sample_fullpath("BUFR4.tmpl")
if fpath is None:
return
is_strict = True
offsets = codes_extract_offsets(fpath, CODES_PRODUCT_ANY, is_strict)
offsets_list = list(offsets)
assert len(offsets_list) == 1
assert offsets_list[0] == 0
def test_bufr_extract_headers():
fpath = get_sample_fullpath("BUFR4_local.tmpl")
if fpath is None:
return
headers = list(codes_bufr_extract_headers(fpath))
# Sample file contains just one message
assert len(headers) == 1
header = headers[0]
assert header["edition"] == 4
assert header["internationalDataSubCategory"] == 255
assert header["masterTablesVersionNumber"] == 24
assert header["ident"].strip() == "91334"
assert header["rdbtimeSecond"] == 19
assert math.isclose(header["localLongitude"], 151.83)
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