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#!/bin/bash
#============================================================================
# Copyright 2009- ECMWF.
# This software is licensed under the terms of the Apache Licence version 2.0
# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
# In applying this licence, ECMWF does not waive the privileges and immunities
# granted to it by virtue of its status as an intergovernmental organisation
# nor does it submit to any jurisdiction.
#============================================================================
set -e
META_MSG_LEN=60
#set -x #goes to stderr
function failed() {
local msg=$1
echo $msg >&2
exit 1
}
function runSsh() {
local cmd=$1
if [[ $proxyCommand != "" ]] ; then
(set -x; ssh ${sshProxyJump} ${sshOptions} -o ProxyCommand="${proxyCommand}" ${remoteUH} "${cmd}" > ${targetFile})
else
(set -x; ssh ${sshProxyJump} ${sshOptions} ${remoteUH} "${cmd}" > ${targetFile})
fi
}
function runScp() {
if [[ $proxyCommand != "" ]] ; then
(set -x; scp ${scpOptions} -o ProxyCommand="${proxyCommand}" ${remoteUH}:${sourceFile} ${targetFile})
else
(set -x; scp ${scpOptions} ${remoteUH}:${sourceFile} ${targetFile})
fi
}
# The metadata is a fixed ${META_MSG_LEN} bytes added to the end of the result ${targetFile}
# So when we have the result:
# - we need to extract the metadata and write it into ${metaFile}
# - we need to remove the metadata from the end of the file
function proc_md_result() {
usedLen=$(($META_MSG_LEN + 1))
# get "metadata" from end of the file
d=$(tail -c $usedLen $targetFile)
echo "d=$d"
# get file size
size=$(wc -c <"$targetFile")
# check pos mode with no delta. In this case a sole "1" is the file contents!
if [[ $size -le 2 && ${byteMode} == "pos" ]] ; then
if [[ $(echo $d | cut -c 1) == "1" ]] ; then
echo "1" > $metaFile
: > "$targetFile"
return
fi
fi
if [[ $size -lt $META_MSG_LEN ]] ; then
failed "Invalid resulting file size=$size bytes! Expected at least $META_MSG_LEN bytes"
fi
# remove the metadata from the file. This is a generic
# solution working even on MacOS (where there is no truncate)
#echo $size
size=$(($size - $usedLen))
#echo $size
head -c $size "$targetFile" > "${targetFile}.1"
mv "${targetFile}.1" "$targetFile"
# get metadata
r=$(echo $d | cut -d ":" -f 1)
t=$(echo $d | cut -d ":" -f 2)
c=$(echo $d | cut -d ":" -f 3)
# write metadata into file
echo "$r:$t:$c:" > $metaFile
}
# transfer the whole file
function get_file_all() {
echo "transfer the whole file"
runScp
#(set -x; scp ${scpOptions} ${remoteUH}:${sourceFile} ${targetFile})
}
# transfer the file from a given byte offset
function get_file_pos() {
cmd=$(cat <<-END
tail -c +$((${byteValue}+1)) ${sourceFile}
END
)
echo "transfer file from byte offset=${byteValue}"
runSsh "$cmd"
#(set -x; ssh ${sshProxyJump} ${remoteUH} ${sshOptions} "${cmd}" > ${targetFile})
}
# transfer the last N bytes of the file
function get_file_last() {
cmd=$(cat <<-END
sourceSize=\$(wc -c < ${sourceFile})
if [[ \${sourceSize} -gt 0 && \${sourceSize} -le ${byteValue} ]] ; then
cat ${sourceFile}
else
tail -c ${byteValue} ${sourceFile}
fi
END
)
#printf 'cmd: %s\n' "${cmd}"
echo "transfer last ${byteValue} bytes"
runSsh "$cmd"
}
# transfer the whole file with extra "metadata"
function get_file_all_md() {
echo "transfer the whole file"
# the metadata is a fixed META_MSG_LEN bytes added to the end of the result.
# So when we have the result:
# - we need to extract the metadata and write it into ${metaFile}
# - we need to remove the metadata from the end of the file
cmd=$(cat <<-END
aModTime=\$(date -r "${sourceFile}" +%s)
os=\$(uname | tr '[:upper:]' '[:lower:]')
if [[ \$os == darwin || \$os == "freebsd" ]] ; then
aCheckSum=\$(head -c 1024 ${sourceFile} 2>/dev/null | shasum | cut -d ' ' -f 1)
else
aCheckSum=\$(head -c 1024 ${sourceFile} 2>/dev/null | sha1sum | cut -d ' ' -f 1)
fi
m="0:\$aModTime:\$aCheckSum:"
m=\$(printf %-${META_MSG_LEN}s \$m | tr ' ' X)
cat "${sourceFile}"
echo \$m
END
)
#echo $cmd
runSsh "$cmd"
# extracts + removes metadata from the end of file
proc_md_result
}
# transfer the file contents from a given byte offset. Based on the "metadata":
# - if the there is no change a single "1" trnasferred
# - if data after the offset seems to be appended this delta + metadata is transferred
# - otherwise the whole file + metadata is transferred back
function get_file_pos_md() {
# the metadata is a fixed META_MSG_LEN bytes added to the end of the result.
# So when we have the result:
# - we need to extract the metadata and write it into ${metaFile}
# - we need to remove the metadata from the end of the file
cmd=$(cat <<-END
aSize=\$(wc -c <"${sourceFile}")
aModTime=\$(date -r "${sourceFile}" +%s)
os=\$(uname | tr '[:upper:]' '[:lower:]')
if [[ \$os == darwin || \$os == "freebsd" ]] ; then
aCheckSum=\$(head -c 1024 ${sourceFile} 2>/dev/null | shasum | cut -d ' ' -f 1)
else
aCheckSum=\$(head -c 1024 ${sourceFile} 2>/dev/null | sha1sum | cut -d ' ' -f 1)
fi
all=1
if [[ \$aSize -eq ${byteValue} ]] ; then
if [[ ( \$aModTime -eq 0 || \$aModTime -eq ${modTime} ) && ( $checkSum == "x" || \$aCheckSum == "${checkSum}" ) ]] ; then
echo "1"
exit 0
fi
elif [[ \$aSize -gt ${byteValue} && \$aCheckSum == "${checkSum}" ]] ; then
all=0
fi
if [ \$all -eq 0 ] ; then
tail -c +$((${byteValue}+1)) ${sourceFile}
m="1:\$aModTime:\$aCheckSum:"
else
cat ${sourceFile}
m="0:\$aModTime:\$aCheckSum:"
fi
m=\$(printf %-${META_MSG_LEN}s \$m | tr ' ' X)
echo \$m
END
)
echo "transfer file from byte offset=${byteValue}"
runSsh "$cmd"
# extracts + removes metadata from end of file
proc_md_result
}
# fetching directory listing
function get_dir() {
dirPath=$(dirname ${sourceFile})
sourceName=$(basename ${sourceFile})
echo "dirPath="$dirPath
echo "sourceName="$sourceName
pattern=$(echo $sourceName | cut -d '.' -f 1)".*"
# the task here is to get the file modification date, file size in bytes
# and file name for each file matching the pattern in the remote directory.
# ls -l cannot be used here because apart from the parsing problems the
# modification date is not always complete (e.g. for dates older than 6 months).
# Using stat is not an option either since it can have different options on
# different unix systems
cmd=$(cat <<-END
cd ${dirPath}
for f in \$(ls $pattern) ; do
if [[ ! -d "\$f" ]] ; then
echo \$(date -r "\$f" +%s) \$( wc -c "\$f" | awk '{print \$1}' ) \$f
fi
done
END
)
echo
runSsh "$cmd"
}
#echo " arguments=$*"
#echo "shell=${SHELL}"
mode=
sourceFile=
remoteUid=
remoteHost=
targetFile=
byteMode=
byteValue=
sshProxyJump=
proxyJump=
sshOptions="-C -o StrictHostKeyChecking=no -o PasswordAuthentication=no"
scpOptions="-C -o StrictHostKeyChecking=no -o PasswordAuthentication=no"
metaFile=
modTime=0
checkSum="x"
socksPort=
while getopts m:s:u:h:t:j:b:v:o:c:x:p: flag
do
case "${flag}" in
m) mode=${OPTARG};;
s) sourceFile=${OPTARG};;
u) remoteUid=${OPTARG};;
h) remoteHost=${OPTARG};;
t) targetFile=${OPTARG};;
j) proxyJump=${OPTARG};;
b) byteMode=${OPTARG};;
v) byteValue=${OPTARG};;
x) metaFile=${OPTARG};;
o) modTime=${OPTARG};;
c) checkSum=${OPTARG};;
p) socksPort=${OPTARG};;
esac
done
echo ""
echo "mode=$mode"
echo "sourceFile=$sourceFile"
echo "remoteUid=$remoteUid"
echo "remoteHost=$remoteHost"
echo "socksPort=$socksPort"
echo "targetFile=$targetFile"
echo "proxyJump=$proxyJump"
echo "byteMode=$byteMode"
echo "byteValue=$byteValue"
echo "metaFile=$metaFile"
echo "modTime=$modTime"
echo "checkSum=$checkSum"
echo ""
if [[ $mode != "file_md" && $mode != "file" && $mode != "dir" ]] ; then
failed "invalid mode=$mode! Has to be file_md, file or dir"
fi
if [[ $sourceFile == "" ]] ; then
failed "sourceFile is empty!"
fi
if [[ $targetFile == "" ]] ; then
failed "targetFile is empty!"
fi
# SOCKS based transfer
if [[ $socksPort != "" ]] ; then
proxyCommand='nc -x 127.0.0.1:'"${socksPort}"' %h %p'
if [[ ${scpOptions} == "" ]] ; then
failed "scpOptions cannot be empty!"
fi
if [[ $remoteUid == "" || $remoteUid == "__USER__" ]] ; then
remoteUH=localhost
else
remoteUH="${remoteUid}@localhost"
fi
# no SOCKS
else
if [[ $remoteHost == "" ]] ; then
failed "remoteHost is empty!"
fi
if [[ $remoteUid == "" ]] ; then
failed "remoteUid is empty!"
fi
if [[ $remoteUid == "__USER__" ]] ; then
remoteUid=${USER}
fi
remoteUH="${remoteUid}@${remoteHost}"
fi
if [[ $remoteUH == "" ]] ; then
failed "remoteUH is empty!"
fi
# proxyjump
if [[ $proxyJump == "__NOJUMP__" ]] ; then
proxyJump=""
fi
if [[ $proxyJump != "" ]] ; then
sshProxyJump="-J ${proxyJump}"
if [[ ${scpOptions} == "" ]] ; then
failed "scpOptions cannot be empty!"
fi
scpOptions="${scpOptions} -o ProxyJump=${proxyJump}"
fi
# transfer mode
if [[ $mode == "file" ]] ; then
if [[ $byteMode != "all" && $byteMode != "pos" && $byteMode != "last" ]] ; then
failed "invalid byteMode value! Allowed values: all, pos, last"
fi
if [[ $byteValue == "" ]] ; then
failed "byteValue is empty!"
fi
if [[ $byteValue -lt 0 ]] ; then
failed "byteValue (=${byteValue}) must be >=0!"
fi
elif [[ $mode == "file_md" ]] ; then
if [[ $byteMode != "all" && $byteMode != "pos" ]] ; then
failed "invalid byteMode value! Allowed values are: all, pos"
fi
if [[ $byteValue == "" ]] ; then
failed "byteValue is empty!"
fi
if [[ $byteValue -lt 0 ]] ; then
failed "byteValue (=${byteValue}) must be >=0!"
fi
if [[ $metaFile == "" ]] ; then
failed "metaFile is empty!"
fi
if [[ $byteMode == "pos" ]] ; then
if [[ $modTime == "" ]] ; then
failed "modTime is empty!"
fi
if [[ $checkSum == "" ]] ; then
failed "checkSum is empty!"
fi
fi
fi
# fetching a file
if [[ $mode == "file" ]] ; then
# transfer the whole file
if [[ $byteMode == "all" ]] ; then
get_file_all
# transfer from a given byte offset
elif [[ $byteMode == "pos" ]] ; then
get_file_pos
#transfer the last bytes of the file
elif [[ $byteMode == "last" ]] ; then
get_file_last
else
failed "invalid byteMode=${byteMode} option when mode=${mode}"
fi
# fetching a file with metadata + checking
elif [[ $mode == "file_md" ]] ; then
# transfer the whole file
if [[ $byteMode == "all" ]] ; then
get_file_all_md
elif [[ $byteMode == "pos" ]] ; then
get_file_pos_md
else
failed "invalid byteMode=${byteMode} option when mode=${mode}"
fi
# fetching directory listing
else
get_dir
fi
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