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#!/bin/ksh
#/////////1/////////2/////////3/////////4/////////5/////////6/////////7/////////8
# Name :
# Author : Avi
# Revision : $Revision: #5 $
#
# Copyright 2009- ECMWF.
# This software is licensed under the terms of the Apache Licence version 2.0
# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
# In applying this licence, ECMWF does not waive the privileges and immunities
# granted to it by virtue of its status as an intergovernmental organisation
# nor does it submit to any jurisdiction.
#/////////1/////////2/////////3/////////4/////////5/////////6/////////7/////////8
# ==================================================================
# Error handling
set -e # stop the shell on first error
set -u # fail when using an undefined variable
# ensure correct permission for installation
umask 0022
# docker build?
[[ -d opt/boost_1_53_0/ ]] && export BOOST_ROOT=/opt/boost_1_53_0/ ARCH=linux PYTHONPATH=/usr/local:${PYTHONPATH:=} LD_LIBRARY_PATH=/usr/local/lib:${LD_LIBRARY_PATH:=}
# ====================================================================
show_error_and_exit() {
echo "cmake.sh expects at least one argument"
echo " cmake.sh [ options] "
echo ""
echo " debug - make a DEBUG build"
echo " make - run make after cmake"
echo " ecbuild - Use git cloned ecbuild over the module loaded ecbuild(default)"
echo " sys_install - install to /usr/local/apps/ecflow/<version> defaults is /var/tmp/$USER/install/cmake/ecflow/<version>"
echo " test - run all the tests"
echo " test_safe - only run deterministic tests"
echo " ctest - all ctest -R <test> -V"
echo " clang - build with clang compiler"
echo " shared - build with shared boost libs"
echo " intel - build with intel compiler"
echo " clang_tidy - create compilation database for clang_tdiy and then call run-clang-tidy.py"
echo " iwyu - INCLUDE what you use"
echo " tsan - is short for clang thread sanitiser"
echo " asan - is short for address sanitiser"
echo " msan - is short for memory sanitiser"
echo " no_gui - Don't build the gui"
echo " no_ssl - build without using openssl"
echo " log - enable debug output"
echo " boost - use environment variable BOOST_ROOT=$BOOST_ROOT"
echo " package_source - produces ecFlow-<version>-Source.tar.gz file, for users"
echo " copies the tar file to $SCRATCH"
echo " copy_tarball - copies ecFlow-<version>-Source.tar.gz to /tmp/$USER/tmp/. and untars file"
echo ""
echo "For a system install"
echo "./cmake.sh sys_install make -j8 install"
exit 1
}
sys_install=
ecbuild_arg=
copy_tarball_arg=
package_source_arg=
make_arg=
shared_arg=
make_only_arg=
test_arg=
test_safe_arg=
clang_arg=
clang_tidy_arg=
clang_tidy_args=
intel_arg=
tsan_arg=
mode_arg=release
verbose_arg=
ctest_arg=
clean_arg=
no_gui_arg=
no_ssl_arg=
log_arg=
asan_arg=
msan_arg=
ubsan_arg=
iwyu_arg=
boost_arg=
while [[ "$#" != 0 ]] ; do
if [[ "$1" = debug || "$1" = release ]] ; then
mode_arg=$1
elif [[ "$1" = make_only ]] ; then
make_only_arg=make
shift
while [[ "$#" != 0 ]] ; do
make_only_arg="$make_only_arg $1"
shift
done
break
elif [[ "$1" = make ]] ; then
make_arg=$1
shift
while [[ "$#" != 0 ]] ; do
make_arg="$make_arg $1"
shift
done
break
elif [[ "$1" = clang_tidy ]] ; then
clang_tidy_arg=$1 ;
shift
while [[ "$#" != 0 ]] ; do
clang_tidy_args="$clang_tidy_args $1"
shift
done
break
elif [[ "$1" = iwyu ]] ; then iwyu_arg=$1 ;
elif [[ "$1" = shared ]] ; then shared_arg=$1 ;
elif [[ "$1" = boost ]] ; then boost_arg=$1 ;
elif [[ "$1" = no_gui ]] ; then no_gui_arg=$1 ;
elif [[ "$1" = no_ssl ]] ; then no_ssl_arg=$1 ;
elif [[ "$1" = sys_install ]] ; then sys_install=$1 ;
elif [[ "$1" = ecbuild ]] ; then ecbuild_arg=$1 ;
elif [[ "$1" = log ]] ; then log_arg=$1 ;
elif [[ "$1" = clang ]] ; then clang_arg=$1 ;
elif [[ "$1" = intel ]] ; then intel_arg=$1 ;
elif [[ "$1" = clean ]] ; then clean_arg=$1 ;
elif [[ "$1" = tsan ]] ; then tsan_arg=$1 ;
elif [[ "$1" = asan ]] ; then asan_arg=$1 ;
elif [[ "$1" = msan ]] ; then msan_arg=$1 ;
elif [[ "$1" = ubsan ]] ; then ubsan_arg=$1 ;
elif [[ "$1" = package_source ]] ; then package_source_arg=$1 ;
elif [[ "$1" = copy_tarball ]] ; then copy_tarball_arg=$1 ;
elif [[ "$1" = test ]] ; then test_arg=$1 ;
elif [[ "$1" = test_safe ]] ; then test_safe_arg=$1 ;
elif [[ "$1" = ctest ]] ; then
ctest_arg=$1 ;
shift
while [[ "$#" != 0 ]] ; do
ctest_arg="$ctest_arg $1"
shift
done
break
else
show_error_and_exit
fi
# shift remove last argument
shift
done
echo "copy_tarball_arg=$copy_tarball_arg"
echo "package_source_arg=$package_source_arg"
echo "make_arg=$make_arg"
echo "test_arg=$test_arg"
echo "test_safe_arg=$test_safe_arg"
echo "clang_arg=$clang_arg"
echo "clang_tidy_arg=$clang_tidy_arg"
echo "tsan_arg=$tsan_arg"
echo "mode_arg=$mode_arg"
echo "verbose_arg=$verbose_arg"
echo "no_gui_arg=$no_gui_arg"
echo "ecbuild_arg=$ecbuild_arg"
set -x # echo script lines as they are executed
set -o pipefail # fail if last(rightmost) command exits with a non-zero status
source_dir=$(pwd)
# ==================== compiler flags ========================================
#
# GNU 4.8+ -Wno-unused-local-typedefs -> get round warning in boost headers
# GNU 5.3 -Wno-unused-variable -> get round warning in boost headers
# GNU 6.1 -Wno-deprecated-declarations -> auto_ptr deprecated warning, mostly in boost headers
# GNU 7.3 -Wno-maybe-uninitialized -> boost python warnings, specific to Pyext only
# CLANG -ftemplate-depth=512
#
CXX_FLAGS="-Wno-unused-local-typedefs -Wno-unused-variable -Wno-deprecated-declarations -Wno-uninitialized -Wno-maybe-uninitialized"
CXX_LINK_FLAGS=""
# ==================== modules ================================================
# To load module automatically requires Korn shell, system start scripts
module swap gnu/7.3.0
cmake_extra_options=""
if [[ "$clang_arg" = clang || "$clang_tidy_arg" = clang_tidy || "$iwyu_arg" = iwyu ]] ; then
module unload gnu
module load clang/9.0.1
# [-Wdeprecated-register] /usr/local/apps/python/2.7.12-01/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
# [-Wmacro-redefined] /usr/local/apps/python/2.7.12-01/include/python2.7/pyconfig.h:1215:9: warning: '_XOPEN_SOURCE' macro redefined
CXX_FLAGS=""
CXX_FLAGS="$CXX_FLAGS -Wno-deprecated-declarations -Wno-deprecated-register -Wno-expansion-to-defined -Wno-exceptions"
if [[ "$iwyu_arg" = iwyu ]] ; then
cmake_extra_options="-DCMAKE_CXX_INCLUDE_WHAT_YOU_USE=/usr/local/apps/iwyu/0.11/bin/include-what-you-use;-Xiwyu;--mapping_file=$source_dir/build_scripts/iwyu/boost.imp"
fi
fi
if [[ "$intel_arg" = intel ]] ; then
# fails because:
# /tmp/ma0/workspace/ecflow/ACore/src/cereal_optional_nvp.hpp(52): error: namespace "std" has no member "enable_if_t"
# > icc -v
# > icc version 19.0.4.243 (gcc version 4.8.0 compatibility)
# Require setting LD_RUN_PATH an CXX, to correctly pick the right std library
module unload eccodes
module unload gnu
module load intel/19.0.4
export LD_RUN_PATH="/usr/local/apps/gcc/8.3.0/lib64"
export CXX="icpc -cxxlib=/usr/local/apps/gcc/8.3.0"
export PATH="/usr/local/apps/gcc/8.3.0/bin:$PATH"
$CXX -v
#exit 1
CXX_FLAGS="-std=c++14"
#CXX_FLAGS="$CXX_FLAGS -Wno-deprecated-declarations -Wno-deprecated-register -Wno-expansion-to-defined -Wno-exceptions"
fi
if [[ $ecbuild_arg != ecbuild ]] ; then
module load ecbuild/new
fi
module load python
module load python3/3.6.10-01
#module load python3/3.8.8-01
module load cmake/new # need cmake 3.12.0 to build python3. Allow boost python 2 and 3 libs to be found
# ==============================================================================================
# sanitisers
if [[ "$tsan_arg" = tsan && "$asan_arg" = asan ]] ; then
echo "Cant use address and thread sanitiser at the same time"
fi
if [[ "$tsan_arg" = tsan ]] ; then
CXX_FLAGS="$CXX_FLAGS -fsanitize=thread -fno-omit-frame-pointer"
CXX_LINK_FLAGS="$CXX_LINK_FLAGS -fsanitize=thread"
fi
if [[ "$asan_arg" = asan ]] ; then
CXX_FLAGS="$CXX_FLAGS -fsanitize=address -fno-omit-frame-pointer"
CXX_LINK_FLAGS="$CXX_LINK_FLAGS -fsanitize=address"
export ECF_TEST_SANITIZER_AS=1 # enable address sanitizer tests
fi
if [[ "$ubsan_arg" = ubsan ]] ; then
#CXX_FLAGS="$CXX_FLAGS -fsanitize=undefined -fsanitize-minimal-runtime -fno-omit-frame-pointer -fno-sanitize-recover=all" # exit after all errors minimal info
#CXX_FLAGS="$CXX_FLAGS -fsanitize=undefined -fno-omit-frame-pointer -fno-sanitize-recover=all" # exit on first error, max info
CXX_FLAGS="$CXX_FLAGS -fsanitize=undefined -fno-omit-frame-pointer" # report error, max info, no exit on error
CXX_LINK_FLAGS="$CXX_LINK_FLAGS -fsanitize=undefined"
export ECF_TEST_SANITIZER_UB=1 # enable undefined behaviour tests
fi
if [[ "$msan_arg" = msan ]] ; then
CXX_FLAGS="$CXX_FLAGS -fsanitize=memory -fPIE -fno-omit-frame-pointer -fsanitize-memory-track-origins"
CXX_LINK_FLAGS="$CXX_LINK_FLAGS -fsanitize=memory" # -fPIE -pie"
fi
if [[ "$shared_arg" = shared ]] ; then
cmake_extra_options="$cmake_extra_options -DENABLE_STATIC_BOOST_LIBS=OFF"
fi
if [[ "$ARCH" = cray ]] ; then
# disable new UI, no QT on cray
# Use the cray wrappers, these will add the correct flags.
# Assumes we have CRAY_ADD_RPATH=yes
cmake_extra_options="$cmake_extra_options -DENABLE_UI=OFF -DCMAKE_C_COMPILER=cc -DCMAKE_CXX_COMPILER=CC"
if [[ $intel_arg = intel ]] ; then
module swap PrgEnv-cray PrgEnv-intel
else
module swap PrgEnv-cray PrgEnv-gnu
module swap gcc/7.3.0
fi
module unload eccodes # Otherwise ecflow.so pulls in libeccodes.so
module unload atp # must use for NON MPI code (ATP abnormal termination processing only works with cray MPI for ESM modes)
module load craype-target-local_host # must use for NON MPI code
export CRAY_ADD_RPATH=yes
export ECFLOW_CRAY_BATCH=1
fi
#####################################################################################
# Boost:
# By default it looks for environment variable BOOST_ROOT, if not it can specified on the command line. i.e
# -DBOOST_ROOT=/var/tmp/$USER/boost/boost_1_53_0
#
# This must be done after change of compiler/environment
# versions of boost >= 1.67 now tag the python libs, i.e. libboost_python27-mt.a, libboost_python36-mt.so
if [[ $boost_arg = boost ]] ; then
echo "Using environment variable BOOST_ROOT=$BOOST_ROOT"
else
module load boost/1.71.0
fi
# ====================================================================================
# default to Release
cmake_build_type=
if [[ $mode_arg = debug ]] ; then
cmake_build_type=Debug
else
cmake_build_type=Release
fi
# ====================================================================================
# clean up source before packaging, do this after deleting ecbuild
#
if [[ $package_source_arg = package_source ]] ; then
source build_scripts/clean.sh
fi
# ====================================================================================
# Use for local install
#
cd $WK
release=$(cat ACore/src/ecflow_version.h | grep 'ECFLOW_RELEASE' | awk '{print $3}'| sed 's/["]//g')
major=$(cat ACore/src/ecflow_version.h | grep 'ECFLOW_MAJOR' | awk '{print $3}'| sed 's/["]//g')
minor=$(cat ACore/src/ecflow_version.h | grep 'ECFLOW_MINOR' | awk '{print $3}'| sed 's/["]//g')
install_prefix=/var/tmp/$USER/install/cmake/ecflow/$release.$major.$minor
if [[ $sys_install = sys_install ]] ; then
install_prefix=/usr/local/apps/ecflow/$release.$major.$minor
fi
# =======================================================================================
# Change directory to build directory
#
workspace=$(pwd)/..
build_dir_root=../bdir
# separate build dir for clang tidy, so we can check fixes
if [[ "$clang_tidy_arg" = clang_tidy ]] ; then
build_dir_root=../bdir_clang
fi
if [[ $clean_arg = clean ]] ; then
rm -rf $build_dir_root/$mode_arg/ecflow
fi
mkdir -p $build_dir_root/$mode_arg/ecflow
cd $build_dir_root/$mode_arg/ecflow
# =============================================================================================
# ctest
#
if [[ $test_safe_arg = test_safe ]] ; then
ctest -R ^u_
ctest -R c_
ctest -R py_u
ctest -R s_client
if [[ $test_safe_arg = test_safe ]] ; then
exit 0
fi
fi
if [[ "$ctest_arg" != "" ]] ; then
if [[ "$asan_arg" = asan ]] ; then
# LD_PRELOAD is only required when creating a shared lib, than needs asan
# export LD_PRELOAD=/usr/local/apps/clang/7.0.1/lib64/libasan.so
#if [[ $clang_arg != "clang" ]] ; then
# # for python module we need to preload asan as it needs to be the very first library
# # ==2971==ASan runtime does not come first in initial library list;
# # you should either link runtime to your application or manually preload it with LD_PRELOAD.
# export LD_PRELOAD=/usr/local/apps/gcc/7.3.0/lib64/gcc/x86_64-suse-linux/7.3.0/libasan.so
#fi
export ASAN_OPTIONS=suppressions=$WK/build_scripts/ecflow_asan.supp
export LSAN_OPTIONS=suppressions=$WK/build_scripts/ecflow_lsan.supp
$ctest_arg
elif [[ "$tsan_arg" = tsan ]] ; then
export LD_PRELOAD=/usr/local/apps/clang/7.0.1/lib64/libtsan.so
if [[ $clang_arg != "clang" ]] ; then
# LD_PRELOAD needed otherwise we get: .... cannot allocate memory in static TLS block
export LD_PRELOAD=/usr/local/apps/gcc/7.3.0/lib64/gcc/x86_64-suse-linux/7.3.0/libtsan.so
fi
export ASAN_OPTIONS=suppressions=$WK/build_scripts/ecflow_asan.supp
export LSAN_OPTIONS=suppressions=$WK/build_scripts/ecflow_lsan.supp
$ctest_arg
else
$ctest_arg
fi
exit 0
fi
if [[ "$make_only_arg" != "" ]] ; then
$make_only_arg
exit 0
fi
# ====================================================================================
#
# -DCMAKE_PYTHON_INSTALL_TYPE = [ local | setup ]
# -DCMAKE_PYTHON_INSTALL_PREFIX should *only* used when using python setup.py (CMAKE_PYTHON_INSTALL_TYPE=setup)
# *AND* for testing python install to local directory
#
ssl_options=
if [[ $no_ssl_arg = no_ssl ]] ; then
ssl_options="-DENABLE_SSL=OFF"
fi
log_options=
if [[ $log_arg = log ]] ; then
log_options="-DECBUILD_LOG_LEVEL=DEBUG"
fi
gui_options=
if [[ $no_gui_arg = no_gui ]] ; then
gui_options="-DENABLE_UI=OFF"
fi
test_options=
if [[ $test_arg = test ]] ; then
test_options="-DENABLE_ALL_TESTS=ON"
fi
if [[ $package_source_arg = package_source ]] ; then
# for packaging we build GUI by default, and do not run all tests
gui_options=
fi
ecbuild=ecbuild
if [[ $ecbuild_arg = ecbuild ]] ; then
ecbuild=$workspace/ecbuild/bin/ecbuild
fi
# An alternative is to run cmake directly. (i.e to use its options/flags)
# cmake -C $workspace/ecflow/bamboo/macosx1010-flags.cmake $source_dir \
# -DCMAKE_MODULE_PATH=$workspace/ecbuild/cmake \
# .....
#
# DCMAKE_EXPORT_COMPILE_COMMANDS create compiler database. used by clang-tidy and others
$ecbuild $source_dir \
-DCMAKE_BUILD_TYPE=$cmake_build_type \
-DCMAKE_INSTALL_PREFIX=$install_prefix \
-DENABLE_WARNINGS=ON \
-DCMAKE_CXX_FLAGS="$CXX_FLAGS" \
-DCMAKE_EXE_LINKER_FLAGS="$CXX_LINK_FLAGS" \
-DSITE_SPECIFIC_SERVER_SCRIPT="/home/ma/emos/bin/ecflow_site.sh" \
${cmake_extra_options} \
-DCMAKE_EXPORT_COMPILE_COMMANDS=ON \
${gui_options} \
${ssl_options} \
${log_options} \
${test_options} \
-DCMAKE_PREFIX_PATH="/usr/local/apps/qt/5.7.0/5.7/gcc_64/"
#-DPYTHON_EXECUTABLE=/usr/local/apps/python3/3.6.8-01/bin/python3 \
#-DPYTHON_EXECUTABLE=/usr/local/apps/python/2.7.12-01/bin/python \
#-DCMAKE_EXE_LINKER_FLAGS='-fsanitize=memory -fPIE -pie'
#-DCMAKE_PYTHON_INSTALL_TYPE=local \
#-DENABLE_PYTHON=OFF \
#-DENABLE_PYTHON_PTR_REGISTER=ON \
#-DCMAKE_PYTHON_INSTALL_PREFIX=/var/tmp/$USER/install/cmake/ecflow/$release.$major.$minor \
#-DENABLE_UI=ON \ # ecflow_ui
#-DENABLE_ALL_TESTS=ON \
#-DENABLE_SERVER=OFF \
#-DENABLE_PROFILING=ON \
#-DECBUILD_GPROF_FLAGS \
# export PATH=/tmp/$USER/opt/qt5/bin:$PATH
if [[ "$clang_tidy_arg" = clang_tidy ]] ; then
python $WK/build_scripts/run-clang-tidy.py $clang_tidy_args
exit 0
fi
# =============================================================================================
if [[ "$make_arg" != "" ]] ; then
$make_arg
# $make_arg VERBOSE=1
# generate the server file locally, and install it. Otherwise list of server will not be complete set
echo $make_arg | grep -q "install"
if [[ $? -eq 0 ]] ; then
if [[ -f /home/ma/emos/bin/ecflow_site_server_install.sh ]] ; then
/home/ma/emos/bin/ecflow_site_server_install.sh -g -5
if [[ -f servers ]] ; then
mv servers $install_prefix/share/ecflow/.
fi
fi
fi
exit 0
fi
# =============================================================================================
if [[ $package_source_arg = package_source ]] ; then
make package_source
if [[ $copy_tarball_arg = copy_tarball ]] ; then
rm -rf /tmp/$USER/tmp
mkdir -p /tmp/$USER/tmp
cp ecFlow-$release.$major.$minor-Source.tar.gz /tmp/$USER/tmp/.
cd /tmp/$USER/tmp/
tar -zxf ecFlow-$release.$major.$minor-Source.tar.gz
fi
cp ecFlow-$release.$major.$minor-Source.tar.gz $SCRATCH/.
fi
# ============================================================================================
# Python:
# -DCMAKE_PYTHON_INSTALL_TYPE = [ local | setup ]
# default: local
# local : this will install to $INSTALL_PREFIX/$release.$major.$minor/lib/python2.7/site-packages/ecflow/
# setup : experimental only, python way of installing
#
# -DCMAKE_PYTHON_INSTALL_PREFIX should *only* used when using python setup.py (CMAKE_PYTHON_INSTALL_TYPE=setup)
# *AND* for testing python install to local directory
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