File: run-unit-test

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ecopcr 1.0.1%2Bdfsg-4
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#!/bin/bash
set -e

pkg=ecopcr
CUR_DIR=`pwd`

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a ${CUR_DIR}/tests/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

ecoPCR -d ecodb -e 3 -l 50 -L 500 TCACAGACCTGTTATTGC TYTGTCTGSTTRATTSCG > output.ecopcr
[ -s "output.ecopcr" ] && echo "PASS Test"