1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
|
#
# ############## COMMON #####################
#
/**
\defgroup Common Common
Common contains different types of common functionality.
*/
/**
\defgroup ANNwrap ANNwrap
\ingroup Common
Classes that serve as a wrap around the ANN library.
*/
/**
\defgroup Miscellaneous Miscellaneous
\ingroup Common
The Miscellaneous contains everything else.
*/
/**
\defgroup ParameterFileParser ParameterFileParser
\ingroup Common
The ParameterFileParser contains functionality to communicate options and parameter values to elastix.
*/
/**
\defgroup Timer Timer
\ingroup Common
Timer contains functionality to time (parts of) the registration.
*/
/**
\defgroup xout xout
\ingroup Common
xout contains functionality to print all output of the program to whatever.
*/
#
# ############## COMPONENTS #####################
#
/**
\defgroup Components Components
Components contains the different registration components.
*/
/**
\defgroup ImageSamplers ImageSamplers
\ingroup Components
ImageSamplers determine how the fixed image is sampled during the registration process. Examples are Random or Full (all voxels).
*/
/**
\defgroup Interpolators Interpolators
\ingroup Components
Interpolators are used to interpolate intensities of images and deformations of transforms.
*/
/**
\defgroup Metrics Metrics
\ingroup Components
Metrics are the similarity measures that a registration algorithm tries to optimize.
*/
/**
\defgroup Optimizers Optimizers
\ingroup Components
Optimizers are used in the registration framework to find the best similarity between images, i.e., to optimize some similarity measure.
*/
/**
\defgroup Registrations Registrations
\ingroup Components
Registrations are classes that combine all components of a registration framework, such as fixed and moving images, the metric, transform, optimizer, etc.
*/
/**
\defgroup ResampleInterpolators ResampleInterpolators
\ingroup Components
ResampleInterpolators are used to interpolate the intensity of an image when resampling it.
*/
/**
\defgroup Resamplers Resamplers
\ingroup Components
Resamplers are used to calculate a new deformed image from a tranform and an input image.
*/
/**
\defgroup Transforms Transforms
\ingroup Components
Transforms model the underlying deformation field during registration.
*/
/**
\defgroup ImagePyramids ImagePyramids
\ingroup Components
ImagePyramids are used in a multiresolution framework in order to avoid local minima and increase the capture range of a registration.
*/
#
# ############## CORE #####################
#
/**
\defgroup Core Core
This group contains the elastix core.
*/
/**
\defgroup ComponentBaseClasses Component Base Classes
\ingroup Core
ComponentBaseClasses are base classes for the different components. For example: the TransformBase class contains common functionality that all Transform types need.
*/
/**
\defgroup Configuration Configuration
\ingroup Core
The Configuration classes make it possible to conveniently and easily choose a registration, which consists of a combination of interpolator, transform, metric, etc.
*/
/**
\defgroup Install Install
\ingroup Core
The Install group contains functionality to install and use the different libraries.
*/
/**
\defgroup Kernel Kernel
\ingroup Core
Kernel contains the basic registration layout.
*/
/**
\defgroup Main Main
\ingroup Core
Main contains the main elastix and transformix program.
*/
|
