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/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef __elxTransformixMain_H_
#define __elxTransformixMain_H_
#include "elxElastixMain.h"
namespace elastix
{
/**
* \class TransformixMain
* \brief A class with all functionality to configure transformix.
*
* The TransformixMain class inherits from ElastixMain. We overwrite the Run()
* -function. In the new Run() the Run()-function from the
* ElastixTemplate-class is not called (as in elxElastixMain.cxx),
* because this time we don't want to start a registration, but
* just apply a transformation to an input image.
*
* \ingroup Kernel
*/
class TransformixMain : public ElastixMain
{
public:
/** Standard itk. */
typedef TransformixMain Self;
typedef ElastixMain Superclass;
typedef itk::SmartPointer< Self > Pointer;
typedef itk::SmartPointer< const Self > ConstPointer;
/** Method for creation through the object factory. */
itkNewMacro( Self );
/** Run-time type information (and related methods). */
itkTypeMacro( TransformixMain, ElastixMain );
/** Typedef's from Superclass. */
/** typedef's from itk base Object. */
typedef Superclass::ObjectType ObjectType;
typedef Superclass::ObjectPointer ObjectPointer;
typedef Superclass::DataObjectType DataObjectType;
typedef Superclass::DataObjectPointer DataObjectPointer;
/** Elastix components. */
typedef Superclass::ElastixBaseType ElastixBaseType;
typedef Superclass::ConfigurationType ConfigurationType;
typedef Superclass::ArgumentMapType ArgumentMapType;
typedef Superclass::ConfigurationPointer ConfigurationPointer;
typedef Superclass::ObjectContainerType ObjectContainerType;
typedef Superclass::DataObjectContainerType DataObjectContainerType;
typedef Superclass::ObjectContainerPointer ObjectContainerPointer;
typedef Superclass::DataObjectContainerPointer DataObjectContainerPointer;
/** Typedefs for the database that holds pointers to New() functions.
* Those functions are used to instantiate components, such as the metric etc.
*/
typedef Superclass::ComponentDatabaseType ComponentDatabaseType;
typedef Superclass::ComponentDatabasePointer ComponentDatabasePointer;
typedef Superclass::PtrToCreator PtrToCreator;
typedef Superclass::ComponentDescriptionType ComponentDescriptionType;
typedef Superclass::PixelTypeDescriptionType PixelTypeDescriptionType;
typedef Superclass::ImageDimensionType ImageDimensionType;
typedef Superclass::DBIndexType DBIndexType;
/** Typedef for class that populates a ComponentDatabase. */
typedef Superclass::ComponentLoaderType ComponentLoaderType;
typedef Superclass::ComponentLoaderPointer ComponentLoaderPointer;
/** Typedef that is used in the elastix dll version. */
typedef Superclass::ParameterMapType ParameterMapType;
/** Overwrite Run() from base-class. */
virtual int Run( void ) ITK_OVERRIDE;
/** Overwrite Run( argmap ) from superclass. Simply calls the superclass. */
virtual int Run( ArgumentMapType & argmap ) ITK_OVERRIDE;
virtual int Run( ArgumentMapType & argmap, ParameterMapType & inputMap ) ITK_OVERRIDE;
/** Run version for using transformix as library. */
virtual int Run( ArgumentMapType & argmap, std::vector< ParameterMapType > & inputMaps );
/** Get and Set input- and outputImage. */
virtual void SetInputImageContainer(
DataObjectContainerType * inputImageContainer );
protected:
TransformixMain(){}
virtual ~TransformixMain();
/** InitDBIndex sets m_DBIndex to the value obtained
* from the ComponentDatabase.
*/
virtual int InitDBIndex( void ) ITK_OVERRIDE;
private:
TransformixMain( const Self & ); // purposely not implemented
void operator=( const Self & ); // purposely not implemented
};
} // end namespace elastix
#endif // end #ifndef __elxTransformixMain_h
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