1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
|
import sys
import os
import os.path
import glob
from optparse import OptionParser
#-------------------------------------------------------------------------------
# the main function
# cd bin_VS2010
# ctest -C Release
# cd Testing
# python ../../elastix/Testing/elx_get_checksum_list.py -l elastix_run*
# cd ..
# cmake .
# ctest -C Release -R COMPARE_CHECKSUM
# svn commit -m "ENH: updating baselines after recent change X"
def main():
# usage, parse parameters
usage = "usage: %prog [options] arg"
parser = OptionParser( usage )
# option to debug and verbose
parser.add_option( "-v", "--verbose",
action="store_true", dest="verbose" )
# options to control files
parser.add_option( "-l", "--list", type="string", dest="directoryList", help="list of elastix output directories" )
(options, args) = parser.parse_args()
# Check if option -l is given
if options.directoryList == None :
parser.error( "The option directory list (-l) should be given" )
# Use glob, this works not only on Linux
dirList = glob.glob( options.directoryList );
# Add everything not processed
dirList.extend( args );
print( "directory checksum" )
for directory in dirList:
# Equivalent to: fileName = options.directory + "/" + "elastix.log"
fileName = os.path.join( directory, "elastix.log" );
# Read elastix.log and find last line with checksum
try:
f = open( fileName )
except IOError as e:
print( directory + " No elastix.log found" )
continue
checksumFound = False;
for line in f:
if "Registration result checksum:" in line:
checksumline = line;
checksumFound = True;
# Extract checksum
if checksumFound:
checksum = checksumline.split(': ')[1].rstrip( "\n" );
# Print result
print( directory + " " + checksum );
else:
print( directory + " -" );
f.close();
return 0
#-------------------------------------------------------------------------------
if __name__ == '__main__':
sys.exit(main())
|
