1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341
|
/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
//
// \author Denis P. Shamonin and Marius Staring. Division of Image Processing,
// Department of Radiology, Leiden, The Netherlands
//
// \note This work was funded by the Netherlands Organisation for
// Scientific Research (NWO NRG-2010.02 and NWO 639.021.124).
//
#ifndef itkGPUKernelManagerHelperFunctions_h
#define itkGPUKernelManagerHelperFunctions_h
#include "itkGPUImage.h"
#include "itkOpenCLKernelManager.h"
#include "itkOpenCLContext.h"
#include "itkOpenCLOstreamSupport.h"
#include <string>
namespace itk
{
// Definition of GPUImageBase 1D
typedef struct
{
cl_float Direction;
cl_float IndexToPhysicalPoint;
cl_float PhysicalPointToIndex;
cl_float Spacing;
cl_float Origin;
cl_uint Size;
} GPUImageBase1D;
// Definition of GPUImageBase 2D
typedef struct
{
cl_float4 Direction;
cl_float4 IndexToPhysicalPoint;
cl_float4 PhysicalPointToIndex;
cl_float2 Spacing;
cl_float2 Origin;
cl_uint2 Size;
} GPUImageBase2D;
// Definition of GPUImageBase 3D
typedef struct
{
cl_float16 Direction; // OpenCL does not have float9
cl_float16 IndexToPhysicalPoint; // OpenCL does not have float9
cl_float16 PhysicalPointToIndex; // OpenCL does not have float9
cl_float3 Spacing;
cl_float3 Origin;
cl_uint3 Size;
} GPUImageBase3D;
//----------------------------------------------------------------------------
template <typename ImageType>
void
SetKernelWithDirection(const typename ImageType::DirectionType & dir,
cl_float & direction1d,
cl_float4 & direction2d,
cl_float16 & direction3d)
{
const unsigned int ImageDim = (unsigned int)(ImageType::ImageDimension);
if (ImageDim == 1)
{
float direction = 0.0f;
direction = static_cast<float>(dir[0][0]);
direction1d = direction;
}
else if (ImageDim == 2)
{
float direction[4];
unsigned int index = 0;
for (unsigned int i = 0; i < ImageDim; ++i)
{
for (unsigned int j = 0; j < ImageDim; ++j)
{
direction[index] = static_cast<float>(dir[i][j]);
++index;
}
}
for (unsigned int i = 0; i < 4; ++i)
{
direction2d.s[i] = direction[i];
}
}
else
{
// OpenCL does not support float9 therefore we are using float16
float direction[16];
unsigned int index = 0;
for (unsigned int i = 0; i < ImageDim; ++i)
{
for (unsigned int j = 0; j < ImageDim; ++j)
{
direction[index] = static_cast<float>(dir[i][j]);
++index;
}
}
for (unsigned int i = 9; i < 16; ++i)
{
direction[i] = 0.0f;
}
for (unsigned int i = 0; i < 16; ++i)
{
direction3d.s[i] = direction[i];
}
}
}
template <typename ImageType>
void
SetKernelWithITKImage(OpenCLKernelManager::Pointer & kernelManager,
const int kernelIdx,
cl_uint & argIdx,
const typename ImageType::Pointer & image,
typename GPUDataManager::Pointer & imageBase,
const bool copyImage,
const bool copyImageBase)
{
if (ImageType::ImageDimension > 3 || ImageType::ImageDimension < 1)
{
itkGenericExceptionMacro("SetKernelWithITKImage only supports 1D/2D/3D images.");
}
// Perform the safe check
if (kernelManager.IsNull())
{
itkGenericExceptionMacro("The kernel manager is NULL.");
}
if (image.IsNull())
{
itkGenericExceptionMacro("The ITK image is NULL. "
"Unable to set ITK image information to the kernel manager.");
}
// Set ITK image to the kernelManager
if (copyImage)
{
kernelManager->SetKernelArgWithImage(kernelIdx, argIdx++, image->GetGPUDataManager());
}
// Set ITK image base to the kernelManager
if (copyImageBase)
{
const unsigned int ImageDim = (unsigned int)(ImageType::ImageDimension);
GPUImageBase1D imageBase1D;
GPUImageBase2D imageBase2D;
GPUImageBase3D imageBase3D;
// Set size
typename ImageType::RegionType largestPossibleRegion;
if (image.IsNotNull())
{
largestPossibleRegion = image->GetLargestPossibleRegion();
}
using size_type = unsigned int;
size_type size[ImageType::ImageDimension];
for (unsigned int i = 0; i < ImageDim; ++i)
{
if (image.IsNotNull())
{
size[i] = static_cast<size_type>(largestPossibleRegion.GetSize()[i]);
}
else
{
size[i] = 0;
}
}
if (ImageDim == 1)
{
imageBase1D.Size = size[0];
}
else if (ImageDim == 2)
{
for (unsigned int i = 0; i < ImageDim; ++i)
{
imageBase2D.Size.s[i] = size[i];
}
}
else if (ImageDim == 3)
{
for (unsigned int i = 0; i < ImageDim; ++i)
{
imageBase3D.Size.s[i] = size[i];
}
}
// Set spacing
float spacing[ImageType::ImageDimension];
for (unsigned int i = 0; i < ImageDim; ++i)
{
if (image.IsNotNull())
{
spacing[i] = static_cast<float>(image->GetSpacing()[i]);
}
else
{
spacing[i] = 0.0f;
}
}
if (ImageDim == 1)
{
imageBase1D.Spacing = spacing[0];
}
else if (ImageDim == 2)
{
for (unsigned int i = 0; i < ImageDim; ++i)
{
imageBase2D.Spacing.s[i] = spacing[i];
}
}
else if (ImageDim == 3)
{
for (unsigned int i = 0; i < ImageDim; ++i)
{
imageBase3D.Spacing.s[i] = spacing[i];
}
}
// Set origin
float origin[ImageType::ImageDimension];
for (unsigned int i = 0; i < ImageDim; ++i)
{
if (image.IsNotNull())
{
origin[i] = static_cast<float>(image->GetOrigin()[i]);
}
else
{
origin[i] = 0.0f;
}
}
if (ImageDim == 1)
{
imageBase1D.Origin = origin[0];
}
else if (ImageDim == 2)
{
for (unsigned int i = 0; i < ImageDim; ++i)
{
imageBase2D.Origin.s[i] = origin[i];
}
}
else if (ImageDim == 3)
{
for (unsigned int i = 0; i < ImageDim; ++i)
{
imageBase3D.Origin.s[i] = origin[i];
}
}
if (image.IsNotNull())
{
SetKernelWithDirection<ImageType>(
image->GetDirection(), imageBase1D.Direction, imageBase2D.Direction, imageBase3D.Direction);
SetKernelWithDirection<ImageType>(image->GetIndexToPhysicalPoint(),
imageBase1D.IndexToPhysicalPoint,
imageBase2D.IndexToPhysicalPoint,
imageBase3D.IndexToPhysicalPoint);
SetKernelWithDirection<ImageType>(image->GetPhysicalPointToIndex(),
imageBase1D.PhysicalPointToIndex,
imageBase2D.PhysicalPointToIndex,
imageBase3D.PhysicalPointToIndex);
}
else
{
typename ImageType::DirectionType dir_null;
dir_null.Fill(0);
SetKernelWithDirection<ImageType>(dir_null, imageBase1D.Direction, imageBase2D.Direction, imageBase3D.Direction);
SetKernelWithDirection<ImageType>(
dir_null, imageBase1D.IndexToPhysicalPoint, imageBase2D.IndexToPhysicalPoint, imageBase3D.IndexToPhysicalPoint);
SetKernelWithDirection<ImageType>(
dir_null, imageBase1D.PhysicalPointToIndex, imageBase2D.PhysicalPointToIndex, imageBase3D.PhysicalPointToIndex);
}
// Set image base
imageBase->Initialize();
imageBase->SetBufferFlag(CL_MEM_READ_ONLY);
if (ImageDim == 1)
{
imageBase->SetBufferSize(sizeof(GPUImageBase1D));
}
else if (ImageDim == 2)
{
imageBase->SetBufferSize(sizeof(GPUImageBase2D));
}
else if (ImageDim == 3)
{
imageBase->SetBufferSize(sizeof(GPUImageBase3D));
}
imageBase->Allocate();
if (ImageDim == 1)
{
imageBase->SetCPUBufferPointer(&imageBase1D);
}
else if (ImageDim == 2)
{
imageBase->SetCPUBufferPointer(&imageBase2D);
}
else if (ImageDim == 3)
{
imageBase->SetCPUBufferPointer(&imageBase3D);
}
imageBase->SetGPUDirtyFlag(true);
imageBase->UpdateGPUBuffer();
kernelManager->SetKernelArgWithImage(kernelIdx, argIdx++, imageBase);
}
}
} // end namespace itk
#endif /* itkGPUKernelManagerHelperFunctions_h */
|