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/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkNDImageBase_h
#define itkNDImageBase_h
#include "itkImage.h"
#include "itkArray.h"
#include <string>
#include "itkImageFileWriter.h"
namespace itk
{
/**
* \class NDImageBase
* \brief An image whose dimension can be specified at runtime.
*
* The NDImageBase class is needed for the FullSearch optimizer.
* It allows run-time construction of an N-dimensional image. It
* has most of the functionality of a normal itk::Image. \todo not all!
* An internal writer and reader are included for convenience.
*
* The NewNDImage function defines the dimension of the image.
* CreateNewImage creates an instance of an itk::Image, with
* dimension as specified by NewNDImage.
* Note: the NewNDImage does not return an itk::Image, but an
* elx::NDImageTemplate.
*
* Suggested way of using this class:\n
* NDImageBase<short> var1 = NDImageBase::NewNDImage(3);\n
* var1->CreateNewImage();\n
* The result is similar as:\n
* itk::Image<short,3>::Pointer var1 = itk::Image<short,3>::New();\n
* except that the actual itk::Image is stored as member variable
* in the NDImageTemplate.
*
* \sa FullSearchOptimizer, NDImageTemplate
* \ingroup Miscellaneous
*/
template <class TPixel>
class ITK_TEMPLATE_EXPORT NDImageBase : public Object
{
public:
ITK_DISALLOW_COPY_AND_MOVE(NDImageBase);
/** Standard class typedefs.*/
using Self = NDImageBase;
using Superclass = Object;
using Pointer = SmartPointer<Self>;
using ConstPointer = SmartPointer<const Self>;
/** Method for creation through the object factory. */
// itkNewMacro( Self );
// not declared, because instantiating an object of this
// (abstract) type makes no sense.
/** Run-time type information (and related methods). */
itkTypeMacro(NDImageBase, Object);
using DataObjectPointer = DataObject::Pointer;
/** Type definitions like normal itkImages, independent of the dimension */
using PixelType = typename Image<TPixel, 2>::PixelType;
using ValueType = typename Image<TPixel, 2>::ValueType;
using InternalPixelType = typename Image<TPixel, 2>::InternalPixelType;
using AccessorType = typename Image<TPixel, 2>::AccessorType;
using PixelContainer = typename Image<TPixel, 2>::PixelContainer;
using PixelContainerPointer = typename Image<TPixel, 2>::PixelContainerPointer;
using PixelContainerConstPointer = typename Image<TPixel, 2>::PixelContainerConstPointer;
using Spacing2DType = typename ImageBase<2>::SpacingType;
using Point2DType = typename ImageBase<2>::PointType;
using SpacingValueType = typename Spacing2DType::ValueType;
using PointValueType = typename Point2DType::ValueType;
using OffsetValueType = typename ImageBase<2>::OffsetValueType;
/** ND versions of the index and sizetypes. Unlike in
* their counterparts in the itk::Image, their size
* can be defined at runtime. The elx::NDImageTemplate
* takes care of converting from/to these types to
* to/from the corresponding types in itk::Image.*/
using IndexType = Array<IndexValueType>;
using SizeType = Array<SizeValueType>;
using SpacingType = Array<SpacingValueType>;
using PointType = Array<PointValueType>;
using OffsetType = Array<OffsetValueType>;
/** \todo: extend to direction cosines; but not needed for now in elastix */
/** Region typedef support. A region is used to specify a subset of an image. */
// using typename Superclass::RegionType;
/** \todo an NDRegionType should first be declared, in the same way as NDImage
* use SetRegions(size) for now. then knowlegde of the RegionType is not
* necessary.
* alternative: forget about the regiontype and add the functions
* SetLargestPossibleRegion, SetRegions etc with arguments (index,size)
* or maybe: ImageIORegion
*/
// void SetRegions(RegionType region) = 0;
virtual void
SetRegions(SizeType size) = 0;
virtual void
SetRequestedRegion(DataObject * data) = 0;
virtual void
Allocate() = 0;
virtual void
Initialize() = 0;
virtual void
FillBuffer(const TPixel & value) = 0;
virtual void
SetPixel(const IndexType & index, const TPixel & value) = 0;
virtual const TPixel &
GetPixel(const IndexType & index) const = 0;
virtual TPixel &
GetPixel(const IndexType & index) = 0;
TPixel & operator[](const IndexType & index) { return this->GetPixel(index); }
const TPixel & operator[](const IndexType & index) const { return this->GetPixel(index); }
virtual TPixel *
GetBufferPointer() = 0;
virtual const TPixel *
GetBufferPointer() const = 0;
virtual PixelContainer *
GetPixelContainer() = 0;
virtual const PixelContainer *
GetPixelContainer() const = 0;
virtual void
SetPixelContainer(PixelContainer * container) = 0;
virtual AccessorType
GetPixelAccessor() = 0;
virtual const AccessorType
GetPixelAccessor() const = 0;
virtual void
SetSpacing(const SpacingType & spacing) = 0;
virtual void
SetOrigin(const PointType & origin) = 0;
/* Get Spacing/Origin return copies; not a const &, like
* itkImage; necessary because of the conversion to arrays */
virtual SpacingType
GetSpacing() = 0;
virtual PointType
GetOrigin() = 0;
/** \todo Transform IndexToPoint methods. */
virtual void
CopyInformation(const DataObject * data) = 0;
virtual const OffsetValueType *
GetOffsetTable() const = 0;
virtual OffsetValueType
ComputeOffset(const IndexType & ind) const = 0;
virtual IndexType
ComputeIndex(OffsetValueType offset) const = 0;
/** Extra functions for NDImage. */
/** Get the Dimension.*/
virtual unsigned int
ImageDimension() = 0;
virtual unsigned int
GetImageDimension() = 0;
virtual void
SetImageIOWriter(ImageIOBase * _arg) = 0;
virtual ImageIOBase *
GetImageIOWriter() = 0;
virtual void
SetImageIOReader(ImageIOBase * _arg) = 0;
virtual ImageIOBase *
GetImageIOReader() = 0;
/** Write the actual image to file. */
virtual void
Write() = 0;
/** Read image data from file into the actual image */
virtual void
Read() = 0;
/** Use New method to create a new actual image */
virtual void
CreateNewImage() = 0;
/** Set/Get the Input/OutputFileName */
virtual void
SetOutputFileName(const char *) = 0;
virtual void
SetInputFileName(const char *) = 0;
virtual const char *
GetOutputFileName() = 0;
virtual const char *
GetInputFileName() = 0;
static Pointer
NewNDImage(unsigned int dim);
protected:
NDImageBase() = default;
~NDImageBase() override = default;
// virtual void PrintSelf(std::ostream& os, Indent indent) const = 0;
};
} // end namespace itk
#include "itkNDImageTemplate.h"
namespace itk
{
template <class TPixel>
auto
NDImageBase<TPixel>::NewNDImage(unsigned int dim) -> Pointer
{
switch (dim)
{
case 1:
return dynamic_cast<NDImageBase<TPixel> *>(NDImageTemplate<TPixel, 1>::New().GetPointer());
case 2:
return dynamic_cast<NDImageBase<TPixel> *>(NDImageTemplate<TPixel, 2>::New().GetPointer());
case 3:
return dynamic_cast<NDImageBase<TPixel> *>(NDImageTemplate<TPixel, 3>::New().GetPointer());
case 4:
return dynamic_cast<NDImageBase<TPixel> *>(NDImageTemplate<TPixel, 4>::New().GetPointer());
case 5:
return dynamic_cast<NDImageBase<TPixel> *>(NDImageTemplate<TPixel, 5>::New().GetPointer());
// add here more dimensions if needed...
// we could do this also with a recursive
// template and a #define MAXDIM,
// or something like that....
default:
// Return a default-constructed SmartPointer (null).
return typename NDImageBase<TPixel>::Pointer();
}
}
} // end namespace itk
#endif // end #ifndef itkNDImageBase_h
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