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/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef elxAdvancedKappaStatisticMetric_hxx
#define elxAdvancedKappaStatisticMetric_hxx
#include "elxAdvancedKappaStatisticMetric.h"
#include "itkTimeProbe.h"
#include <itkDeref.h>
namespace elastix
{
/**
* ******************* Initialize ***********************
*/
template <class TElastix>
void
AdvancedKappaStatisticMetric<TElastix>::Initialize()
{
itk::TimeProbe timer;
timer.Start();
this->Superclass1::Initialize();
timer.Stop();
log::info(std::ostringstream{} << "Initialization of AdvancedKappaStatistic metric took: "
<< static_cast<long>(timer.GetMean() * 1000) << " ms.");
} // end Initialize()
/**
* ***************** BeforeRegistration ***********************
*/
template <class TElastix>
void
AdvancedKappaStatisticMetric<TElastix>::BeforeRegistration()
{
const Configuration & configuration = itk::Deref(Superclass2::GetConfiguration());
const std::string componentLabel = BaseComponent::GetComponentLabel();
/** Get and set taking the complement. */
bool useComplement = true;
configuration.ReadParameter(useComplement, "UseComplement", componentLabel, 0, -1);
this->SetComplement(useComplement);
/** Get and set the use of the foreground value:
* true) compare with a foreground value
* false) compare if larger than zero
*/
bool useForegroundValue = true;
configuration.ReadParameter(useForegroundValue, "UseForegroundValue", componentLabel, 0, -1);
this->SetUseForegroundValue(useForegroundValue);
/** Get and set the foreground value. */
double foreground = 1.0;
configuration.ReadParameter(foreground, "ForegroundValue", componentLabel, 0, -1);
this->SetForegroundValue(foreground);
} // end BeforeRegistration()
} // end namespace elastix
#endif // end #ifndef elxAdvancedKappaStatisticMetric_hxx
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