1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
|
/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef elxPatternIntensityMetric_h
#define elxPatternIntensityMetric_h
#include "elxIncludes.h" // include first to avoid MSVS warning
#include "itkPatternIntensityImageToImageMetric.h"
namespace elastix
{
/**
* \class PatternIntensityMetric
* \brief An metric based on the itk::PatternIntensityImageToImageMetric.
*
*
* \ingroup Metrics
*
*/
template <class TElastix>
class ITK_TEMPLATE_EXPORT PatternIntensityMetric
: public itk::PatternIntensityImageToImageMetric<typename MetricBase<TElastix>::FixedImageType,
typename MetricBase<TElastix>::MovingImageType>
, public MetricBase<TElastix>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(PatternIntensityMetric);
/** Standard ITK-stuff. */
using Self = PatternIntensityMetric;
using Superclass1 = itk::PatternIntensityImageToImageMetric<typename MetricBase<TElastix>::FixedImageType,
typename MetricBase<TElastix>::MovingImageType>;
using Superclass2 = MetricBase<TElastix>;
using Pointer = itk::SmartPointer<Self>;
using ConstPointer = itk::SmartPointer<const Self>;
/** Method for creation through the object factory. */
itkNewMacro(Self);
/** Run-time type information (and related methods). */
itkTypeMacro(PatternIntensityMetric, itk::PatternIntensityImageToImageMetric);
/** Name of this class.
* Use this name in the parameter file to select this specific metric. \n
* example: <tt>(Metric "PatternIntensity")</tt>\n
*/
elxClassNameMacro("PatternIntensity");
/** Typedefs from the superclass. */
using typename Superclass1::CoordinateRepresentationType;
using typename Superclass1::MovingImageType;
using typename Superclass1::MovingImagePixelType;
using typename Superclass1::MovingImageConstPointer;
using typename Superclass1::FixedImageType;
using typename Superclass1::FixedImageConstPointer;
using typename Superclass1::FixedImageRegionType;
using typename Superclass1::TransformType;
using typename Superclass1::TransformPointer;
using typename Superclass1::InputPointType;
using typename Superclass1::OutputPointType;
using typename Superclass1::TransformParametersType;
using typename Superclass1::TransformJacobianType;
using typename Superclass1::InterpolatorType;
using typename Superclass1::InterpolatorPointer;
using typename Superclass1::RealType;
using typename Superclass1::GradientPixelType;
using typename Superclass1::GradientImageType;
using typename Superclass1::GradientImagePointer;
using typename Superclass1::FixedImageMaskType;
using typename Superclass1::FixedImageMaskPointer;
using typename Superclass1::MovingImageMaskType;
using typename Superclass1::MovingImageMaskPointer;
using typename Superclass1::MeasureType;
using typename Superclass1::DerivativeType;
using typename Superclass1::ParametersType;
using typename Superclass1::FixedImagePixelType;
using typename Superclass1::MovingImageRegionType;
using typename Superclass1::ImageSamplerType;
using typename Superclass1::ImageSamplerPointer;
using typename Superclass1::ImageSampleContainerType;
using typename Superclass1::ImageSampleContainerPointer;
using typename Superclass1::FixedImageLimiterType;
using typename Superclass1::MovingImageLimiterType;
using typename Superclass1::FixedImageLimiterOutputType;
using typename Superclass1::MovingImageLimiterOutputType;
using typename Superclass1::MovingImageDerivativeScalesType;
/** The fixed image dimension. */
itkStaticConstMacro(FixedImageDimension, unsigned int, FixedImageType::ImageDimension);
/** The moving image dimension. */
itkStaticConstMacro(MovingImageDimension, unsigned int, MovingImageType::ImageDimension);
/** Typedef's inherited from Elastix. */
using typename Superclass2::ElastixType;
using typename Superclass2::RegistrationType;
using ITKBaseType = typename Superclass2::ITKBaseType;
/** Sets up a timer to measure the initialization time and
* calls the Superclass' implementation.
*/
void
Initialize() override;
/**
* Do some things before each resolution:
* \li Set CheckNumberOfSamples setting
* \li Set UseNormalization setting
*/
void
BeforeRegistration() override;
void
BeforeEachResolution() override;
protected:
/** The constructor. */
PatternIntensityMetric() = default;
/** The destructor. */
~PatternIntensityMetric() override = default;
private:
elxOverrideGetSelfMacro;
};
} // end namespace elastix
#ifndef ITK_MANUAL_INSTANTIATION
# include "elxPatternIntensityMetric.hxx"
#endif
#endif // end #ifndef elxPatternIntensityMetric_h
|
