1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300
|
/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef elxCMAEvolutionStrategy_hxx
#define elxCMAEvolutionStrategy_hxx
#include "elxCMAEvolutionStrategy.h"
#include <iomanip>
#include <string>
#include <vnl/vnl_math.h>
namespace elastix
{
/**
* ***************** StartOptimization ************************
*/
template <class TElastix>
void
CMAEvolutionStrategy<TElastix>::StartOptimization()
{
/** Check if the entered scales are correct and != [ 1 1 1 ...] */
this->SetUseScales(false);
const ScalesType & scales = this->GetScales();
if (scales.GetSize() == this->GetInitialPosition().GetSize())
{
ScalesType unit_scales(scales.GetSize(), 1.0);
if (scales != unit_scales)
{
/** only then: */
this->SetUseScales(true);
}
}
/** Call the superclass */
this->Superclass1::StartOptimization();
} // end StartOptimization
/**
* ***************** InitializeProgressVariables ************************
*/
template <class TElastix>
void
CMAEvolutionStrategy<TElastix>::InitializeProgressVariables()
{
this->Superclass1::InitializeProgressVariables();
/** Print some settings that can be automatically determined by the optimizer. */
log::info(std::ostringstream{} << "The CMAEvolutionStrategy optimizer uses the following settings:\n"
<< "PopulationSize = " << this->GetPopulationSize() << "\n"
<< "NumberOfParents = " << this->GetNumberOfParents() << "\n"
<< "UseCovarianceMatrixAdaptation = " << this->GetUseCovarianceMatrixAdaptation()
<< "\n"
<< "UpdateBDPeriod = " << this->GetUpdateBDPeriod() << "\n");
} // end InitializeProgressVariables
/**
* ***************** BeforeRegistration ***********************
*/
template <class TElastix>
void
CMAEvolutionStrategy<TElastix>::BeforeRegistration()
{
/** Add target cells to xout[IterationInfo.*/
this->AddTargetCellToIterationInfo("2:Metric");
this->AddTargetCellToIterationInfo("3:StepLength");
this->AddTargetCellToIterationInfo("4:||Step||");
this->AddTargetCellToIterationInfo("5a:Sigma");
this->AddTargetCellToIterationInfo("5b:MaximumD");
this->AddTargetCellToIterationInfo("5c:MinimumD");
/** Format the metric and stepsize as floats */
this->GetIterationInfoAt("2:Metric") << std::showpoint << std::fixed;
this->GetIterationInfoAt("3:StepLength") << std::showpoint << std::fixed;
this->GetIterationInfoAt("4:||Step||") << std::showpoint << std::fixed;
this->GetIterationInfoAt("5a:Sigma") << std::showpoint << std::fixed;
this->GetIterationInfoAt("5b:MaximumD") << std::showpoint << std::fixed;
this->GetIterationInfoAt("5c:MinimumD") << std::showpoint << std::fixed;
} // end BeforeRegistration
/**
* ***************** BeforeEachResolution ***********************
*/
template <class TElastix>
void
CMAEvolutionStrategy<TElastix>::BeforeEachResolution()
{
/** Get the current resolution level.*/
unsigned int level = static_cast<unsigned int>(this->m_Registration->GetAsITKBaseType()->GetCurrentLevel());
/** Set MaximumNumberOfIterations.*/
unsigned int maximumNumberOfIterations = 500;
this->m_Configuration->ReadParameter(
maximumNumberOfIterations, "MaximumNumberOfIterations", this->GetComponentLabel(), level, 0);
this->SetMaximumNumberOfIterations(maximumNumberOfIterations);
/** Set the length of the initial step (InitialSigma). */
double stepLength = 1.0;
this->m_Configuration->ReadParameter(stepLength, "StepLength", this->GetComponentLabel(), level, 0);
this->SetInitialSigma(stepLength);
/** Set ValueTolerance */
double valueTolerance = 0.00001;
this->m_Configuration->ReadParameter(valueTolerance, "ValueTolerance", this->GetComponentLabel(), level, 0);
this->SetValueTolerance(valueTolerance);
/** Set PopulationSize */
unsigned int populationSize = 0;
this->m_Configuration->ReadParameter(populationSize, "PopulationSize", this->GetComponentLabel(), level, 0);
this->SetPopulationSize(populationSize);
/** Set NumberOfParents */
unsigned int numberOfParents = 0;
this->m_Configuration->ReadParameter(numberOfParents, "NumberOfParents", this->GetComponentLabel(), level, 0);
this->SetNumberOfParents(numberOfParents);
/** Set UseDecayingSigma */
bool useDecayingSigma = false;
this->m_Configuration->ReadParameter(useDecayingSigma, "UseDecayingSigma", this->GetComponentLabel(), level, 0);
this->SetUseDecayingSigma(useDecayingSigma);
/** Set SigmaDecayA */
double sigmaDecayA = 50.0;
this->m_Configuration->ReadParameter(sigmaDecayA, "SP_A", this->GetComponentLabel(), level, 0);
this->SetSigmaDecayA(sigmaDecayA);
/** Set SigmaDecayAlpha */
double sigmaDecayAlpha = 0.602;
this->m_Configuration->ReadParameter(sigmaDecayAlpha, "SP_alpha", this->GetComponentLabel(), level, 0);
this->SetSigmaDecayAlpha(sigmaDecayAlpha);
/** Set UseCovarianceMatrixAdaptation */
bool useCovarianceMatrixAdaptation = true;
this->m_Configuration->ReadParameter(
useCovarianceMatrixAdaptation, "UseCovarianceMatrixAdaptation", this->GetComponentLabel(), level, 0);
this->SetUseCovarianceMatrixAdaptation(useCovarianceMatrixAdaptation);
/** Set RecombinationWeightsPreset */
std::string recombinationWeightsPreset = "superlinear";
this->m_Configuration->ReadParameter(
recombinationWeightsPreset, "RecombinationWeightsPreset", this->GetComponentLabel(), level, 0);
this->SetRecombinationWeightsPreset(recombinationWeightsPreset);
/** Set UpdateBDPeriod */
unsigned int updateBDPeriod = 0;
this->m_Configuration->ReadParameter(updateBDPeriod, "UpdateBDPeriod", this->GetComponentLabel(), level, 0);
this->SetUpdateBDPeriod(updateBDPeriod);
/** Set PositionToleranceMin */
double positionToleranceMin = 1e-8;
this->m_Configuration->ReadParameter(
positionToleranceMin, "PositionToleranceMin", this->GetComponentLabel(), level, 0);
this->SetPositionToleranceMin(positionToleranceMin);
/** Set PositionToleranceMax */
double positionToleranceMax = 1e8;
this->m_Configuration->ReadParameter(
positionToleranceMax, "PositionToleranceMax", this->GetComponentLabel(), level, 0);
this->SetPositionToleranceMax(positionToleranceMax);
/** Set MaximumDeviation */
double maximumDeviation = 10.0 * positionToleranceMax * stepLength;
this->m_Configuration->ReadParameter(maximumDeviation, "MaximumDeviation", this->GetComponentLabel(), level, 0);
this->SetMaximumDeviation(maximumDeviation);
/** Set MinimumDeviation */
double minimumDeviation = 0.0;
this->m_Configuration->ReadParameter(minimumDeviation, "MinimumDeviation", this->GetComponentLabel(), level, 0);
this->SetMinimumDeviation(minimumDeviation);
} // end BeforeEachResolution
/**
* ***************** AfterEachIteration *************************
*/
template <class TElastix>
void
CMAEvolutionStrategy<TElastix>::AfterEachIteration()
{
/** Print some information. */
this->GetIterationInfoAt("2:Metric") << this->GetCurrentValue();
this->GetIterationInfoAt("3:StepLength") << this->GetCurrentStepLength();
this->GetIterationInfoAt("4:||Step||") << this->GetCurrentScaledStep().magnitude();
this->GetIterationInfoAt("5a:Sigma") << this->GetCurrentSigma();
this->GetIterationInfoAt("5b:MaximumD") << this->GetCurrentMaximumD();
this->GetIterationInfoAt("5c:MinimumD") << this->GetCurrentMinimumD();
/** Select new samples if desired. These
* will be used in the next iteration */
if (this->GetNewSamplesEveryIteration())
{
this->SelectNewSamples();
}
} // end AfterEachIteration
/**
* ***************** AfterEachResolution *************************
*/
template <class TElastix>
void
CMAEvolutionStrategy<TElastix>::AfterEachResolution()
{
/**
enum StopConditionType {
MetricError,
MaximumNumberOfIterations,
PositionToleranceMin,
PositionToleranceMax,
ValueTolerance,
ZeroStepLength,
Unknown }; */
std::string stopcondition;
switch (this->GetStopCondition())
{
case MetricError:
stopcondition = "Error in metric";
break;
case MaximumNumberOfIterations:
stopcondition = "Maximum number of iterations has been reached";
break;
case PositionToleranceMin:
stopcondition = "The minimum step length condition has been reached";
break;
case PositionToleranceMax:
stopcondition = "The maximum step length condition has been reached";
break;
case ValueTolerance:
stopcondition = "Almost no decrease in function value anymore";
break;
case ZeroStepLength:
stopcondition = "The step length is 0";
break;
default:
stopcondition = "Unknown";
break;
}
/** Print the stopping condition */
log::info(std::ostringstream{} << "Stopping condition: " << stopcondition << ".");
} // end AfterEachResolution
/**
* ******************* AfterRegistration ************************
*/
template <class TElastix>
void
CMAEvolutionStrategy<TElastix>::AfterRegistration()
{
/** Print the best metric value */
double bestValue = this->GetCurrentValue();
log::info(std::ostringstream{} << '\n' << "Final metric value = " << bestValue);
} // end AfterRegistration
} // end namespace elastix
#endif // end #ifndef elxCMAEvolutionStrategy_hxx
|