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/*=========================================================================
*
* Copyright UMC Utrecht and contributors
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef elxTransformixMain_h
#define elxTransformixMain_h
#include "elxMainBase.h"
#include <itkTransformBase.h>
namespace elastix
{
/**
* \class TransformixMain
* \brief A class with all functionality to configure transformix.
*
* The TransformixMain class inherits from ElastixMain. We overwrite the Run()
* -function. In the new Run() the Run()-function from the
* ElastixTemplate-class is not called (as in elxElastixMain.cxx),
* because this time we don't want to start a registration, but
* just apply a transformation to an input image.
*
* \ingroup Kernel
*/
class TransformixMain : public MainBase
{
public:
ITK_DISALLOW_COPY_AND_MOVE(TransformixMain);
/** Standard itk. */
using Self = TransformixMain;
using Superclass = MainBase;
using Pointer = itk::SmartPointer<Self>;
using ConstPointer = itk::SmartPointer<const Self>;
/** Method for creation through the object factory. */
itkNewMacro(Self);
/** Run-time type information (and related methods). */
itkTypeMacro(TransformixMain, ElastixMain);
/** Typedef's from Superclass. */
/** typedef's from itk base Object. */
using Superclass::ObjectPointer;
using Superclass::DataObjectPointer;
/** Elastix components. */
using Superclass::ArgumentMapType;
using Superclass::ObjectContainerType;
using Superclass::DataObjectContainerType;
using Superclass::ObjectContainerPointer;
using Superclass::DataObjectContainerPointer;
/** Typedefs for the database that holds pointers to New() functions.
* Those functions are used to instantiate components, such as the metric etc.
*/
using Superclass::ComponentDatabasePointer;
using Superclass::PtrToCreator;
using Superclass::ComponentDescriptionType;
using Superclass::PixelTypeDescriptionType;
using Superclass::ImageDimensionType;
using Superclass::DBIndexType;
/** Typedef that is used in the elastix dll version. */
using Superclass::ParameterMapType;
using Superclass::Run;
/** Overwrite Run() from base-class. */
int
Run() override;
/** Run version for using transformix as library. */
int
Run(const ArgumentMapType & argmap,
const std::vector<ParameterMapType> & transformParameterMaps,
itk::TransformBase * = nullptr);
/** Get and Set input- and outputImage. */
virtual void
SetInputImageContainer(DataObjectContainerType * inputImageContainer);
protected:
TransformixMain() = default;
~TransformixMain() override;
/** InitDBIndex sets m_DBIndex to the value obtained
* from the ComponentDatabase.
*/
int
InitDBIndex() override;
private:
/** Does Run with an optionally specified Transform. */
int
RunWithTransform(itk::TransformBase *);
// Version used when transformix is used as a library.
void
EnterCommandLineArgumentsWithTransformParameterMaps(const ArgumentMapType & argmap,
const std::vector<ParameterMapType> & transformParameterMaps);
};
} // end namespace elastix
#endif // end #ifndef elxTransformixMain_h
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