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variables:
ITKv5_VERSION: v5.4.0
ITK_GIT_URL: https://github.com/InsightSoftwareConsortium/ITK
ITK_SOURCE_DIR: $(Agent.BuildDirectory)/ITK-source
ITK_BINARY_DIR: $(Agent.BuildDirectory)/ITK-build
ELASTIX_SOURCE_DIR: $(Build.Repository.LocalPath)
ELASTIX_BINARY_DIR: $(Agent.BuildDirectory)/Elastix-build
trigger:
paths:
exclude:
- '*.md'
- LICENSE
- .github/workflows/*
- dox/doxygen/*
- tools/*
pr:
paths:
exclude:
- '*.md'
- LICENSE
- .github/workflows/*
- dox/doxygen/*
- tools/*
jobs:
- job: Windows
timeoutInMinutes: 0
pool:
vmImage: 'windows-2022'
strategy:
matrix:
ITKv5:
itk.version: $(ITKv5_VERSION)
steps:
- script: |
git clone $(ITK_GIT_URL) --branch $(itk.version) --depth 1 "$(ITK_SOURCE_DIR)"
displayName: Clone ITK
- script: |
mkdir "$(ITK_BINARY_DIR)"
mkdir "$(ELASTIX_BINARY_DIR)"
mkdir externalproject-build
displayName: Make build directories
- task: CMake@1
displayName: 'CMake Generate ITK'
inputs:
cmakeArgs: -G "Visual Studio 17 2022" -T host=x64 -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DITK_LEGACY_REMOVE=ON "$(ITK_SOURCE_DIR)"
workingDirectory: "$(ITK_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Build ITK'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: "$(ITK_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Generate Elastix'
inputs:
cmakeArgs: -G "Visual Studio 17 2022" -T host=x64 -DITK_DIR="$(ITK_BINARY_DIR)" -DBUILD_TESTING=ON -DELASTIX_USE_GTEST=ON -DUSE_ALL_COMPONENTS=ON "$(ELASTIX_SOURCE_DIR)"
workingDirectory: "$(ELASTIX_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Build Elastix'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: "$(ELASTIX_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Generate externalproject'
inputs:
cmakeArgs: -G "Visual Studio 17 2022" -T host=x64 -DElastix_DIR=$(ELASTIX_BINARY_DIR) "$(ELASTIX_SOURCE_DIR)/dox/externalproject"
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- task: CMake@1
displayName: 'CMake Build externalproject'
inputs:
cmakeArgs: --build . --config Release
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- bash: ../../../externalproject-build/Release/elastix_translation_example
displayName: 'Run externalproject'
workingDirectory: $(Agent.BuildDirectory)\Elastix-build\bin\Release
- bash: python -m pip install -r "$(ELASTIX_SOURCE_DIR)/Testing/PythonTests/requirements.txt"
displayName: 'Install PythonTests requirements'
- bash: ctest -C Release -VV -j 2 -E "elastix_run_example_COMPARE_IM|elastix_run_3DCT_lung.MI.bspline.ASGD.001_COMPARE_TP"
displayName: 'CTest Elastix'
workingDirectory: $(ELASTIX_BINARY_DIR)
- job: Ubuntu
timeoutInMinutes: 0
pool:
vmImage: 'ubuntu-20.04'
strategy:
matrix:
ITKv5:
itk.version: $(ITKv5_VERSION)
steps:
- script: |
git clone $(ITK_GIT_URL) --branch $(itk.version) --depth 1 "$(ITK_SOURCE_DIR)"
- script: |
mkdir $(ITK_BINARY_DIR)
mkdir $(ELASTIX_BINARY_DIR)
mkdir externalproject-build
displayName: Clone ITK
- task: CMake@1
displayName: 'CMake Generate ITK'
inputs:
cmakeArgs: -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DITK_LEGACY_REMOVE=ON $(ITK_SOURCE_DIR)
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build ITK'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate Elastix'
inputs:
cmakeArgs: -DITK_DIR=$(ITK_BINARY_DIR) -DBUILD_TESTING=ON -DELASTIX_USE_GTEST=ON -DUSE_ALL_COMPONENTS=ON $(ELASTIX_SOURCE_DIR)
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build Elastix'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate externalproject'
inputs:
cmakeArgs: -DElastix_DIR=$(Agent.BuildDirectory)/Elastix-build $(ELASTIX_SOURCE_DIR)/dox/externalproject
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- task: CMake@1
displayName: 'CMake Build externalproject'
inputs:
cmakeArgs: --build .
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- bash: $(Agent.BuildDirectory)/externalproject-build/elastix_translation_example
displayName: 'Run externalproject'
- bash: python -m pip install -r "$(ELASTIX_SOURCE_DIR)/Testing/PythonTests/requirements.txt"
displayName: 'Install PythonTests requirements'
- bash: ctest -C Release -VV -j 2 -E "elastix_run_example_COMPARE_IM|elastix_run_3DCT_lung.MI.bspline.ASGD.001_COMPARE_TP"
displayName: 'CTest Elastix'
workingDirectory: $(ELASTIX_BINARY_DIR)
- job: macOS
timeoutInMinutes: 0
pool:
vmImage: 'macOS-12'
strategy:
matrix:
ITKv5:
itk.version: $(ITKv5_VERSION)
steps:
- script: |
git clone $(ITK_GIT_URL) --branch $(itk.version) --depth 1 "$(ITK_SOURCE_DIR)"
displayName: Clone ITK
- script: |
mkdir $(ITK_BINARY_DIR)
mkdir $(ELASTIX_BINARY_DIR)
mkdir externalproject-build
displayName: Make build directories
- task: CMake@1
displayName: 'CMake Generate ITK'
inputs:
cmakeArgs: -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DITK_LEGACY_REMOVE=ON $(ITK_SOURCE_DIR)
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build ITK'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate Elastix'
inputs:
cmakeArgs: -DITK_DIR=$(ITK_BINARY_DIR) -DBUILD_TESTING=ON -DELASTIX_USE_GTEST=ON -DUSE_ALL_COMPONENTS=ON $(Build.Repository.LocalPath)
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build Elastix'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate externalproject'
inputs:
cmakeArgs: -DElastix_DIR=$(Agent.BuildDirectory)/Elastix-build $(ELASTIX_SOURCE_DIR)/dox/externalproject
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- task: CMake@1
displayName: 'CMake Build externalproject'
inputs:
cmakeArgs: --build .
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- bash: $(Agent.BuildDirectory)/externalproject-build/elastix_translation_example
displayName: 'Run externalproject'
# Note: On macOS, we have not yet found how to successfully install requirements.txt for Python, so for the time being, we skip the tests.
# See also https://github.com/SuperElastix/elastix/issues/739
|
