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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.49.3.
.TH ELASTIX "1" "January 2025" "elastix version: 5.2.0" "User Commands"
.SH NAME
elastix \- manual page for elastix version: 5.2.0
.SH DESCRIPTION
elastix version: 5.2.0
.PP
elastix registers a moving image to a fixed image.
The registration\-process is specified in the parameter file.
.HP
\fB\-\-help\fR, \fB\-h\fR displays this message and exit
.TP
\fB\-\-version\fR
output version information and exit
.TP
\fB\-\-extended\-version\fR
output extended version information and exit
.SS "Call elastix from the command line with mandatory arguments:"
.TP
\fB\-f\fR
fixed image
.TP
\fB\-m\fR
moving image
.TP
\fB\-out\fR
output directory
.TP
\fB\-p\fR
parameter file, elastix handles 1 or more "\-p"
.SS "Optional extra commands:"
.TP
\fB\-fMask\fR
mask for fixed image
.TP
\fB\-mMask\fR
mask for moving image
.TP
\fB\-fp\fR
point set for fixed image
.TP
\fB\-mp\fR
point set for moving image
.TP
\fB\-t0\fR
parameter file for initial transform
.HP
\fB\-loglevel\fR set the log level to "off", "error", "warning", or "info" (default),
.HP
\fB\-priority\fR set the process priority to high, abovenormal, normal (default),
.IP
belownormal, or idle (Windows only option)
.TP
\fB\-threads\fR
set the maximum number of threads of elastix
.PP
The parameter\-file must contain all the information necessary for elastix to run properly. That includes which metric to use, which optimizer, which transform, etc. It must also contain information specific for the metric, optimizer, transform, etc. For a usable parameter\-file, see the website.
.SS "Need further help? Please check:"
.IP
* the elastix website: https://elastix.dev
* the source code repository site: https://github.com/SuperElastix/elastix
* the discussion forum: https://groups.google.com/g/elastix\-imageregistration
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