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|
name: ElastixPublish
on:
workflow_dispatch:
jobs:
publish:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-22.04, windows-2022, macos-14]
include:
- os: ubuntu-22.04
libtorch-cpu-url: "https://download.pytorch.org/libtorch/cpu/libtorch-shared-with-deps-2.8.0%2Bcpu.zip"
libtorch-cuda-url: "https://download.pytorch.org/libtorch/cu128/libtorch-shared-with-deps-2.8.0%2Bcu128.zip"
cuda_toolkit_version: '12.8.0'
itk-git-tag: "v5.4.5"
c-compiler: "gcc"
cxx-compiler: "g++"
cmake-build-type: "Release"
libs:
- elastix-build/bin/libelx-ANNlib.so
- os: windows-2022
libtorch-cpu-url: "https://download.pytorch.org/libtorch/cpu/libtorch-win-shared-with-deps-2.8.0%2Bcpu.zip"
libtorch-cuda-url: "https://download.pytorch.org/libtorch/cu128/libtorch-win-shared-with-deps-2.8.0%2Bcu128.zip"
cuda_toolkit_version: '12.8.0'
itk-git-tag: "v5.4.5"
c-compiler: "cl.exe"
cxx-compiler: "cl.exe"
cmake-build-type: "Release"
libs:
- elastix-build/bin/elx-ANNlib.dll
vcvars64: "C:/Program Files/Microsoft Visual Studio/2022/Enterprise/VC/Auxiliary/Build/vcvars64.bat"
- os: macos-14
c-compiler: "clang"
cxx-compiler: "clang++"
libtorch-cpu-url: "https://download.pytorch.org/libtorch/cpu/libtorch-macos-arm64-2.8.0.zip"
itk-git-tag: "v5.4.5"
cmake-build-type: "Release"
libs:
- elastix-build/bin/libelx-ANNlib.dylib
steps:
- name: Free disk space
if: matrix.os != 'windows-2022'
run: |
echo "Disk before cleanup:"
df -h
sudo rm -rf /usr/share/dotnet /usr/local/lib/android /opt/ghc /opt/hostedtoolcache
sudo docker system prune -af || true
sudo rm -rf /var/lib/apt/lists/*
echo "Disk after cleanup:"
df -h
shell: bash
- name: Clone elastix
uses: actions/checkout@v3
- name: Make directory structure
run: |
items=(*)
mkdir elastix-source
mv ${items[*]} elastix-source
mv .editorconfig elastix-source
mv .clang-format elastix-source
mv elastix-source/Dockerfile .
shell: bash
- name: Get specific version of CMake, Ninja
uses: lukka/get-cmake@latest
- name: Clone and build ITK
uses: ./.github/actions/build_itk
with:
itk-git-tag: ${{ matrix.itk-git-tag }}
c-compiler: ${{ matrix.c-compiler }}
cxx-compiler: ${{ matrix.cxx-compiler }}
cmake-build-type: ${{ matrix.cmake-build-type }}
vcvars: ${{ matrix.vcvars64 }}
- name: Download and extract libtorch cpu (non-MacOS)
if: matrix.os != 'macos-14'
uses: ./.github/actions/download_libtorch
with:
libtorch_url: ${{ matrix.libtorch-cpu-url }}
- name: Build libtorch cpu (MacOS)
if: matrix.os == 'macos-14'
uses: ./.github/actions/build_libtorch
with:
install_prefix: ${{ github.workspace }}/libtorch/libtorch
- name: Configure/Build elastix with IMPACT libtorch cpu
uses: ./.github/actions/build_elastix
with:
c-compiler: ${{ matrix.c-compiler }}
cxx-compiler: ${{ matrix.cxx-compiler }}
cmake-build-type: ${{ matrix.cmake-build-type }}
vcvars: ${{ matrix.vcvars64 }}
- name: Cleanup libtorch (CPU) (Linux)
if: matrix.os == 'ubuntu-22.04'
run: |
mv elastix-build/bin/libImpactMetric.so elastix-build/bin/libImpactMetricCpu.so
rm -rf libtorch
shell: bash
- name: Cleanup libtorch (CPU) [Windows]
if: matrix.os == 'windows-2022'
run: |
mv elastix-build/bin/ImpactMetric.dll elastix-build/bin/ImpactMetricCpu.dll
rmdir /S /Q libtorch
shell: cmd
- name: Install CUDA Toolkit (Windows)
if: matrix.os == 'windows-2022'
uses: Jimver/cuda-toolkit@v0.2.29
with:
cuda: 11.8.0
use-github-cache: false
use-local-cache: false
- name: Install CUDA Toolkit (Linux)
if: matrix.os == 'ubuntu-22.04'
uses: Jimver/cuda-toolkit@v0.2.23
with:
cuda: 12.8.0
sub-packages: '["toolkit"]'
method: 'network'
- name: Download and extract libtorch cuda
if: matrix.os != 'macos-14'
uses: ./.github/actions/download_libtorch
with:
libtorch_url: ${{ matrix.libtorch-cuda-url }}
- name: Build elastix with Impact Cuda (Windows)
if: matrix.os == 'windows-2022'
shell: cmd
run: |
cd elastix-build
cmake -DCMAKE_C_COMPILER="${{ inputs.c-compiler }}" ^
-DCMAKE_CXX_COMPILER="${{ inputs.cxx-compiler }}" ^
-DCMAKE_BUILD_TYPE="${{ inputs.cmake-build-type }}" ^
-DITK_DIR=../ITK-build ^
-DCMAKE_CUDA_FLAGS="-allow-unsupported-compiler -Xcompiler \"/D_ALLOW_COMPILER_AND_STL_VERSION_MISMATCH\"" ^
-DTorch_DIR=../libtorch/libtorch/share/cmake/Torch ^
-DUSE_ALL_COMPONENTS=ON ^
-DBUILD_TESTING:BOOL=ON ^
-DELASTIX_USE_GTEST=ON ^
-GNinja ../elastix-source
cmake --build . --target ImpactMetric
mv bin/ImpactMetric.dll bin/ImpactMetricCuda.dll
mv bin/ImpactMetricCpu.dll bin/ImpactMetric.dll
- name: Build elastix with Impact Cuda (Linux)
if: matrix.os == 'ubuntu-22.04'
shell: bash
run: |
cd elastix-build
cmake -DCMAKE_C_COMPILER="${{ inputs.c-compiler }}" \
-DCMAKE_CXX_COMPILER="${{ inputs.cxx-compiler }}" \
-DCMAKE_BUILD_TYPE="${{ inputs.cmake-build-type }}" \
-DITK_DIR=../ITK-build \
-DTorch_DIR=../libtorch/libtorch/share/cmake/Torch \
-DUSE_ALL_COMPONENTS=ON \
-DBUILD_TESTING:BOOL=ON \
-DELASTIX_USE_GTEST=ON \
-GNinja ../elastix-source
cmake --build . --target ImpactMetric
mv bin/libImpactMetric.so bin/libImpactMetricCuda.so
mv bin/libImpactMetricCpu.so bin/libImpactMetric.so
- name: Publish
uses: ./.github/actions/publish
with:
libs: ${{ join(matrix.libs, ' ') }} elastix-build/bin/*ImpactMetric*
upload-name: ${{ matrix.os }}-libtorch-2.8.0
docker-username: ${{ secrets.DOCKER_HUB_USERNAME }}
docker-password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
|
