File: itkGPURecursiveGaussianImageFilter.hxx

package info (click to toggle)
elastix 5.3.1-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 45,644 kB
  • sloc: cpp: 85,720; lisp: 4,118; python: 1,045; sh: 200; xml: 182; makefile: 33
file content (248 lines) | stat: -rw-r--r-- 8,489 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
/*=========================================================================
 *
 *  Copyright UMC Utrecht and contributors
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *        http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkGPURecursiveGaussianImageFilter_hxx
#define itkGPURecursiveGaussianImageFilter_hxx

#include "itkGPURecursiveGaussianImageFilter.h"
#include "itkOpenCLUtil.h"
#include "itkOpenCLEvent.h"
#include "itkOpenCLDevice.h"

namespace itk
{
template <typename TInputImage, typename TOutputImage>
GPURecursiveGaussianImageFilter<TInputImage, TOutputImage>::GPURecursiveGaussianImageFilter()
{
  std::ostringstream defines;

  if (TInputImage::ImageDimension > 3 || TInputImage::ImageDimension < 1)
  {
    itkExceptionMacro("GPURecursiveGaussianImageFilter supports 1/2/3D image.");
  }

  if (TInputImage::ImageDimension == 1)
  {
    defines << "#define DIM_1\n";
  }
  else
  {
    defines << "#define DIM_" << int(TInputImage::ImageDimension - 1) << "\n";
  }

  // Define m_DeviceLocalMemorySize as:
  // local memory: 16384 bytes / 3 buffers of float = 1365
  const unsigned long localMemSize = this->m_GPUKernelManager->GetContext()->GetDefaultDevice().GetLocalMemorySize();

  this->m_DeviceLocalMemorySize = (localMemSize / 3) / sizeof(float);

  defines << "#define BUFFSIZE " << this->m_DeviceLocalMemorySize << "\n";
  defines << "#define BUFFPIXELTYPE float\n";
  defines << "#define INPIXELTYPE ";
  GetTypenameInString(typeid(typename TInputImage::PixelType), defines);
  defines << "#define OUTPIXELTYPE ";
  GetTypenameInString(typeid(typename TOutputImage::PixelType), defines);

  // OpenCL kernel source
  const char * GPUSource = GPURecursiveGaussianImageFilterKernel::GetOpenCLSource();
  // Build and create kernel
  OpenCLProgram program = this->m_GPUKernelManager->BuildProgramFromSourceCode(GPUSource, defines.str());
  if (!program.IsNull())
  {
    this->m_FilterGPUKernelHandle = this->m_GPUKernelManager->CreateKernel(program, "RecursiveGaussianImageFilter");
  }
  else
  {
    itkExceptionMacro("Kernel has not been loaded from:\n" << GPUSource);
  }
}


//------------------------------------------------------------------------------
template <typename TInputImage, typename TOutputImage>
void
GPURecursiveGaussianImageFilter<TInputImage, TOutputImage>::GPUGenerateData()
{
  itkDebugMacro("Calling GPURecursiveGaussianImageFilter::GPUGenerateData()");

  using GPUInputImage = typename GPUTraits<TInputImage>::Type;
  using GPUOutputImage = typename GPUTraits<TOutputImage>::Type;

  const typename GPUInputImage::Pointer inPtr = dynamic_cast<GPUInputImage *>(this->ProcessObject::GetInput(0));
  typename GPUOutputImage::Pointer      otPtr = dynamic_cast<GPUOutputImage *>(this->ProcessObject::GetOutput(0));

  // Perform the safe check
  if (inPtr.IsNull())
  {
    itkExceptionMacro("The GPU InputImage is NULL. Filter unable to perform.");
  }
  if (otPtr.IsNull())
  {
    itkExceptionMacro("The GPU OutputImage is NULL. Filter unable to perform.");
  }

  const typename GPUOutputImage::SizeType outSize = otPtr->GetLargestPossibleRegion().GetSize();
  const unsigned int                      ln = outSize[this->GetDirection()];
  const auto                              ImageDim = (unsigned int)(TInputImage::ImageDimension);

  // Check if GPU filter are able to perform for this image
  if (ln > this->m_DeviceLocalMemorySize)
  {
    itkExceptionMacro("GPURecursiveGaussianImageFilter unable to perform.");
  }

  int imgSize[TInputImage::ImageDimension];
  for (unsigned int i = 0; i < ImageDim; ++i)
  {
    imgSize[i] = outSize[i];
  }

  std::size_t globalSize1D = 0, globalSize2D[2];
  for (unsigned int i = 0; i < 2; ++i)
  {
    globalSize2D[i] = 0;
  }

  // Initialize globalSize, localSize here
  if (ImageDim == 3)
  {
    // 0 (direction x) : y/z
    // 1 (direction y) : x/z
    // 2 (direction z) : x/y
    switch (this->GetDirection())
    {
      case 0:
        globalSize2D[0] = imgSize[1];
        globalSize2D[1] = imgSize[2];
        break;
      case 1:
        globalSize2D[0] = imgSize[0];
        globalSize2D[1] = imgSize[2];
        break;
      case 2:
        globalSize2D[0] = imgSize[0];
        globalSize2D[1] = imgSize[1];
        break;
    }
  }
  else if (ImageDim == 2)
  {
    globalSize1D = ln;
  }
  else if (ImageDim == 1)
  {
    globalSize1D = 1;
  }

  // Arguments set up
  int argidx = 0;
  this->m_GPUKernelManager->SetKernelArgWithImage(this->m_FilterGPUKernelHandle, argidx++, inPtr->GetGPUDataManager());
  this->m_GPUKernelManager->SetKernelArgWithImage(this->m_FilterGPUKernelHandle, argidx++, otPtr->GetGPUDataManager());

  // Set ln
  this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(ln), &(ln));

  // Set direction
  const int direction = this->GetDirection();
  this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(int), &(direction));

  // Set causal coefficients
  cl_float4 N;
  N.s[0] = static_cast<float>(this->m_N0);
  N.s[1] = static_cast<float>(this->m_N1);
  N.s[2] = static_cast<float>(this->m_N2);
  N.s[3] = static_cast<float>(this->m_N3);
  this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_float4), (void *)&N);

  // Set recursive coefficients
  cl_float4 D;
  D.s[0] = static_cast<float>(this->m_D1);
  D.s[1] = static_cast<float>(this->m_D2);
  D.s[2] = static_cast<float>(this->m_D3);
  D.s[3] = static_cast<float>(this->m_D4);
  this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_float4), (void *)&D);

  // Set anti-causal coefficients
  cl_float4 M;
  M.s[0] = static_cast<float>(this->m_M1);
  M.s[1] = static_cast<float>(this->m_M2);
  M.s[2] = static_cast<float>(this->m_M3);
  M.s[3] = static_cast<float>(this->m_M4);
  this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_float4), (void *)&M);

  // Set recursive coefficients to be used at the boundaries
  cl_float4 BN;
  BN.s[0] = static_cast<float>(this->m_BN1);
  BN.s[1] = static_cast<float>(this->m_BN2);
  BN.s[2] = static_cast<float>(this->m_BN3);
  BN.s[3] = static_cast<float>(this->m_BN4);
  this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_float4), (void *)&BN);

  cl_float4 BM;
  BM.s[0] = static_cast<float>(this->m_BM1);
  BM.s[1] = static_cast<float>(this->m_BM2);
  BM.s[2] = static_cast<float>(this->m_BM3);
  BM.s[3] = static_cast<float>(this->m_BM4);
  this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_float4), (void *)&BM);

  // Set image size
  for (unsigned int i = 0; i < ImageDim; ++i)
  {
    this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint), &(imgSize[i]));
  }
  if (ImageDim == 1)
  {
    const int height = 0;
    this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint), &(height));
  }

  // Launch kernel
  switch (ImageDim)
  {
    case 1:
    case 2:
    {
      OpenCLEvent event = this->m_GPUKernelManager->LaunchKernel(m_FilterGPUKernelHandle, OpenCLSize(globalSize1D));
      event.WaitForFinished();
    }
    break;
    case 3:
    {
      OpenCLEvent event =
        this->m_GPUKernelManager->LaunchKernel(m_FilterGPUKernelHandle, OpenCLSize(globalSize2D[0], globalSize2D[1]));
      event.WaitForFinished();
    }
    break;
  }

  itkDebugMacro("GPURecursiveGaussianImageFilter::GPUGenerateData() finished");
}


//------------------------------------------------------------------------------
template <typename TInputImage, typename TOutputImage>
void
GPURecursiveGaussianImageFilter<TInputImage, TOutputImage>::PrintSelf(std::ostream & os, Indent indent) const
{
  CPUSuperclass::PrintSelf(os, indent);
  GPUSuperclass::PrintSelf(os, indent);
}


} // end namespace itk

#endif /* itkGPURecursiveGaussianImageFilter_hxx */