File: itkGPUShrinkImageFilter.hxx

package info (click to toggle)
elastix 5.3.1-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 45,644 kB
  • sloc: cpp: 85,720; lisp: 4,118; python: 1,045; sh: 200; xml: 182; makefile: 33
file content (208 lines) | stat: -rw-r--r-- 8,091 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
/*=========================================================================
 *
 *  Copyright UMC Utrecht and contributors
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *        http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkGPUShrinkImageFilter_hxx
#define itkGPUShrinkImageFilter_hxx

#include "itkGPUShrinkImageFilter.h"
#include "itkOpenCLUtil.h"

namespace itk
{
/**
 * ****************** Constructor ***********************
 */

template <typename TInputImage, typename TOutputImage>
GPUShrinkImageFilter<TInputImage, TOutputImage>::GPUShrinkImageFilter()
{
  std::ostringstream defines;

  if (TInputImage::ImageDimension > 3 || TInputImage::ImageDimension < 1)
  {
    itkExceptionMacro("GPUShrinkImageFilter supports 1/2/3D image.");
  }
  defines << "#define DIM_" << int(TInputImage::ImageDimension) << "\n";

  defines << "#define INPIXELTYPE ";
  GetTypenameInString(typeid(typename TInputImage::PixelType), defines);
  defines << "#define OUTPIXELTYPE ";
  GetTypenameInString(typeid(typename TOutputImage::PixelType), defines);

  // OpenCL kernel source
  const char * GPUSource = GPUShrinkImageFilterKernel::GetOpenCLSource();
  // Build and create kernel
  OpenCLProgram program = this->m_GPUKernelManager->BuildProgramFromSourceCode(GPUSource, defines.str());
  if (!program.IsNull())
  {
    this->m_FilterGPUKernelHandle = this->m_GPUKernelManager->CreateKernel(program, "ShrinkImageFilter");
  }
  else
  {
    itkExceptionMacro("Kernel has not been loaded from:\n" << GPUSource);
  }
} // end Constructor()


/**
 * ****************** GPUGenerateData ***********************
 */

template <typename TInputImage, typename TOutputImage>
void
GPUShrinkImageFilter<TInputImage, TOutputImage>::GPUGenerateData()
{
  itkDebugMacro("Calling GPUShrinkImageFilter::GPUGenerateData()");

  using GPUInputImage = typename GPUTraits<TInputImage>::Type;
  using GPUOutputImage = typename GPUTraits<TOutputImage>::Type;

  typename GPUInputImage::Pointer  inPtr = dynamic_cast<GPUInputImage *>(this->ProcessObject::GetInput(0));
  typename GPUOutputImage::Pointer otPtr = dynamic_cast<GPUOutputImage *>(this->ProcessObject::GetOutput(0));

  // Perform the safe check
  if (inPtr.IsNull())
  {
    itkExceptionMacro("The GPU InputImage is NULL. Filter unable to perform.");
  }
  if (otPtr.IsNull())
  {
    itkExceptionMacro("The GPU OutputImage is NULL. Filter unable to perform.");
  }

  // Convert the factor for convenient multiplication
  typename TOutputImage::SizeType factorSize;
  const ShrinkFactorsType         shrinkFactors = this->GetShrinkFactors();
  for (std::size_t i = 0; i < InputImageDimension; ++i)
  {
    factorSize[i] = shrinkFactors[i];
  }

  // Define a few indices that will be used to transform from an input pixel
  // to an output pixel
  OutputIndexType  outputIndex;
  OutputOffsetType offsetIndex;

  typename TOutputImage::PointType tempPoint;

  // Use this index to compute the offset everywhere in this class
  outputIndex = otPtr->GetLargestPossibleRegion().GetIndex();

  // We wish to perform the following mapping of outputIndex to
  // inputIndex on all points in our region
  otPtr->TransformIndexToPhysicalPoint(outputIndex, tempPoint);
  const InputIndexType inputIndex = inPtr->TransformPhysicalPointToIndex(tempPoint);

  // Given that the size is scaled by a constant factor eq:
  // inputIndex = outputIndex * factorSize
  // is equivalent up to a fixed offset which we now compute
  OffsetValueType zeroOffset = 0;
  for (std::size_t i = 0; i < InputImageDimension; ++i)
  {
    offsetIndex[i] = inputIndex[i] - outputIndex[i] * shrinkFactors[i];
    // It is plausible that due to small amounts of loss of numerical
    // precision that the offset is negative, this would cause sampling
    // out of out region, this is insurance against that possibility
    offsetIndex[i] = std::max(zeroOffset, offsetIndex[i]);
  }

  const typename GPUOutputImage::SizeType inSize = inPtr->GetLargestPossibleRegion().GetSize();
  const typename GPUOutputImage::SizeType outSize = otPtr->GetLargestPossibleRegion().GetSize();

  const OpenCLSize localSize = OpenCLSize::GetLocalWorkSize(this->m_GPUKernelManager->GetContext()->GetDefaultDevice());

  typename GPUInputImage::SizeType globalSize;
  for (std::size_t i = 0; i < InputImageDimension; ++i)
  {
    // total # of threads
    globalSize[i] =
      localSize[i] *
      (static_cast<unsigned int>(std::ceil(static_cast<float>(outSize[i]) / static_cast<float>(localSize[i]))));
  }

  // arguments set up
  int argidx = 0;
  this->m_GPUKernelManager->SetKernelArgWithImage(this->m_FilterGPUKernelHandle, argidx++, inPtr->GetGPUDataManager());
  this->m_GPUKernelManager->SetKernelArgWithImage(this->m_FilterGPUKernelHandle, argidx++, otPtr->GetGPUDataManager());

  // set arguments for image size/offset/shrinkfactors
  unsigned int inImageSize[InputImageDimension];
  unsigned int outImageSize[InputImageDimension];
  for (unsigned int i = 0; i < InputImageDimension; ++i)
  {
    inImageSize[i] = inSize[i];
    outImageSize[i] = outSize[i];
  }

  unsigned int offset[InputImageDimension];
  unsigned int shrinkfactors[InputImageDimension];

  for (std::size_t i = 0; i < InputImageDimension; ++i)
  {
    offset[i] = offsetIndex[i];
    shrinkfactors[i] = factorSize[i];
  }

  const auto ImageDim = InputImageDimension;
  switch (ImageDim)
  {
    case 1:
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint), &inImageSize);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint), &outImageSize);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint), &offset);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint), &shrinkfactors);
      break;
    case 2:
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint2), &inImageSize);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint2), &outImageSize);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint2), &offset);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint2), &shrinkfactors);
      break;
    case 3:
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint3), &inImageSize);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint3), &outImageSize);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint3), &offset);
      this->m_GPUKernelManager->SetKernelArg(this->m_FilterGPUKernelHandle, argidx++, sizeof(cl_uint3), &shrinkfactors);
      break;
  }

  // launch kernel
  OpenCLEvent event =
    this->m_GPUKernelManager->LaunchKernel(this->m_FilterGPUKernelHandle, OpenCLSize(globalSize), localSize);

  event.WaitForFinished();

  itkDebugMacro("GPUShrinkImageFilter::GPUGenerateData() finished");
} // end GPUGenerateData()


/**
 * ****************** PrintSelf ***********************
 */

template <typename TInputImage, typename TOutputImage>
void
GPUShrinkImageFilter<TInputImage, TOutputImage>::PrintSelf(std::ostream & os, Indent indent) const
{
  CPUSuperclass::PrintSelf(os, indent);
  GPUSuperclass::PrintSelf(os, indent);
} // end PrintSelf()


} // end namespace itk

#endif /* itkGPUShrinkImageFilter_hxx */