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variables:
ITKv5_VERSION: v5.4.5
ITK_GIT_URL: https://github.com/InsightSoftwareConsortium/ITK
LIBTORCH_BINARY_URL_WIN: https://download.pytorch.org/libtorch/cpu/libtorch-win-shared-with-deps-2.6.0%2Bcpu.zip
LIBTORCH_BINARY_URL_LINUX: https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-2.6.0%2Bcpu.zip
LIBTORCH_BINARY_URL_MAC: https://download.pytorch.org/libtorch/cpu/libtorch-macos-arm64-2.6.0.zip
LIBTORCH_BINARY_DIR: $(Agent.BuildDirectory)/libtorch/libtorch
ITK_SOURCE_DIR: $(Agent.BuildDirectory)/ITK-source
ITK_BINARY_DIR: $(Agent.BuildDirectory)/ITK-build
ELASTIX_SOURCE_DIR: $(Build.Repository.LocalPath)
ELASTIX_BINARY_DIR: $(Agent.BuildDirectory)/Elastix-build
trigger:
paths:
exclude:
- '*.md'
- LICENSE
- .github/workflows/*
- dox/doxygen/*
- tools/*
pr:
paths:
exclude:
- '*.md'
- LICENSE
- .github/workflows/*
- dox/doxygen/*
- tools/*
jobs:
- job: Windows
timeoutInMinutes: 0
pool:
vmImage: 'windows-2022'
strategy:
matrix:
ITKv5:
itk.version: $(ITKv5_VERSION)
steps:
- script: |
mkdir "$(ITK_BINARY_DIR)"
mkdir "$(ELASTIX_BINARY_DIR)"
mkdir externalproject-build
mkdir "$(Agent.BuildDirectory)/libtorch"
displayName: 'Make build directories'
- script: |
curl -L "%LIBTORCH_BINARY_URL_WIN%" -o "$(Agent.BuildDirectory)/libtorch.zip"
displayName: 'Download LibTorch CPU'
- task: ExtractFiles@1
displayName: 'Extract LibTorch'
inputs:
archiveFilePatterns: '$(Agent.BuildDirectory)/libtorch.zip'
destinationFolder: '$(Agent.BuildDirectory)/libtorch'
- script: |
git clone $(ITK_GIT_URL) --branch $(itk.version) --depth 1 "$(ITK_SOURCE_DIR)"
displayName: 'Clone ITK'
- task: CMake@1
displayName: 'CMake Generate ITK'
inputs:
cmakeArgs: -G "Visual Studio 17 2022" -T host=x64 -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DITK_LEGACY_REMOVE=ON "$(ITK_SOURCE_DIR)"
workingDirectory: "$(ITK_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Build ITK'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: "$(ITK_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Generate Elastix'
inputs:
cmakeArgs: -G "Visual Studio 17 2022" -T host=x64 -DITK_DIR="$(ITK_BINARY_DIR)" -DTorch_DIR=$(LIBTORCH_BINARY_DIR)/share/cmake/Torch/ -DBUILD_TESTING=ON -DELASTIX_USE_GTEST=ON -DUSE_ALL_COMPONENTS=ON "$(ELASTIX_SOURCE_DIR)"
workingDirectory: "$(ELASTIX_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Build Elastix'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: "$(ELASTIX_BINARY_DIR)"
- task: CMake@1
displayName: 'CMake Generate externalproject'
inputs:
cmakeArgs: -G "Visual Studio 17 2022" -T host=x64 -DElastix_DIR=$(ELASTIX_BINARY_DIR) "$(ELASTIX_SOURCE_DIR)/dox/externalproject"
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- task: CMake@1
displayName: 'CMake Build externalproject'
inputs:
cmakeArgs: --build . --config Release
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- bash: |
export PATH="$(ELASTIX_BINARY_DIR)/bin/Release:$(LIBTORCH_BINARY_DIR)/lib:$PATH"
./Release/elastix_impact_metric_example.exe
displayName: 'Run externalproject'
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- bash: python -m pip install -r "$(ELASTIX_SOURCE_DIR)/Testing/PythonTests/requirements.txt"
displayName: 'Install PythonTests requirements'
- bash: |
export PATH="$(ELASTIX_BINARY_DIR)/bin/Release:$(LIBTORCH_BINARY_DIR)/lib:$PATH"
ctest -C Release -VV -j 2 -E "elastix_run_example_COMPARE_IM|elastix_run_3DCT_lung.MI.bspline.ASGD.001_COMPARE_TP"
displayName: 'CTest Elastix'
workingDirectory: $(ELASTIX_BINARY_DIR)
- job: Ubuntu
timeoutInMinutes: 0
pool:
vmImage: 'ubuntu-22.04'
strategy:
matrix:
ITKv5:
itk.version: $(ITKv5_VERSION)
steps:
- script: |
mkdir $(ITK_BINARY_DIR)
mkdir $(ELASTIX_BINARY_DIR)
mkdir externalproject-build
mkdir "$(Agent.BuildDirectory)/libtorch"
displayName: 'Make build directories'
- script: |
curl -L $(LIBTORCH_BINARY_URL_LINUX) -o $(Agent.BuildDirectory)/libtorch.zip
displayName: 'Download LibTorch CPU'
- task: ExtractFiles@1
displayName: 'Extract LibTorch'
inputs:
archiveFilePatterns: '$(Agent.BuildDirectory)/libtorch.zip'
destinationFolder: '$(Agent.BuildDirectory)/libtorch'
- script: |
git clone $(ITK_GIT_URL) --branch $(itk.version) --depth 1 "$(ITK_SOURCE_DIR)"
displayName: 'Clone ITK'
- task: CMake@1
displayName: 'CMake Generate ITK'
inputs:
cmakeArgs: -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DITK_LEGACY_REMOVE=ON $(ITK_SOURCE_DIR)
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build ITK'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate Elastix'
inputs:
cmakeArgs: -DITK_DIR=$(ITK_BINARY_DIR) -DTorch_DIR=$(LIBTORCH_BINARY_DIR)/share/cmake/Torch/ -DBUILD_TESTING=ON -DELASTIX_USE_GTEST=ON -DUSE_ALL_COMPONENTS=ON $(ELASTIX_SOURCE_DIR)
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build Elastix'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate externalproject'
inputs:
cmakeArgs: -DElastix_DIR=$(Agent.BuildDirectory)/Elastix-build $(ELASTIX_SOURCE_DIR)/dox/externalproject
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- task: CMake@1
displayName: 'CMake Build externalproject'
inputs:
cmakeArgs: --build .
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- bash: ./elastix_impact_metric_example
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
displayName: 'Run externalproject'
- bash: python -m pip install -r "$(ELASTIX_SOURCE_DIR)/Testing/PythonTests/requirements.txt"
displayName: 'Install PythonTests requirements'
- bash: ctest -C Release -VV -j 2 -E "elastix_run_example_COMPARE_IM|elastix_run_3DCT_lung.MI.bspline.ASGD.001_COMPARE_TP"
displayName: 'CTest Elastix'
workingDirectory: $(ELASTIX_BINARY_DIR)
- job: macOS
timeoutInMinutes: 0
pool:
vmImage: 'macos-14'
strategy:
matrix:
ITKv5:
itk.version: $(ITKv5_VERSION)
steps:
- script: |
mkdir $(ITK_BINARY_DIR)
mkdir $(ELASTIX_BINARY_DIR)
mkdir externalproject-build
mkdir "$(Agent.BuildDirectory)/libtorch-build"
displayName: 'Make build directories'
- script: |
git clone --recursive https://github.com/pytorch/pytorch.git $(Agent.BuildDirectory)/pytorch
displayName: 'Clone LibTorch'
- script: |
python3 -m venv $(Agent.BuildDirectory)/venv
source $(Agent.BuildDirectory)/venv/bin/activate
$(Agent.BuildDirectory)/venv/bin/python -m pip install -r $(Agent.BuildDirectory)/pytorch/requirements.txt
cmake $(Agent.BuildDirectory)/pytorch -GNinja -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$(Agent.BuildDirectory)/libtorch -DPython_EXECUTABLE=-DPython_EXECUTABLE=$(Agent.BuildDirectory)/venv/bin/python -DBUILD_PYTHON=OFF -DBUILD_TEST=OFF -DUSE_CUDA=OFF -DUSE_MPS=OFF -DUSE_MKLDNN=OFF -DUSE_QNNPACK=OFF -DUSE_XNNPACK=OFF -DUSE_FBGEMM=OFF
workingDirectory: $(Agent.BuildDirectory)/libtorch-build
displayName: 'CMake Generate LibTorch'
- script: |
source $(Agent.BuildDirectory)/venv/bin/activate
ninja install
workingDirectory: $(Agent.BuildDirectory)/libtorch-build
displayName: 'CMake Build LibTorch'
- script: |
git clone $(ITK_GIT_URL) --branch $(itk.version) --depth 1 "$(ITK_SOURCE_DIR)"
displayName: 'Clone ITK'
- task: CMake@1
displayName: 'CMake Generate ITK'
inputs:
cmakeArgs: -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DITK_LEGACY_REMOVE=ON $(ITK_SOURCE_DIR)
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build ITK'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ITK_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate Elastix'
inputs:
cmakeArgs: -DITK_DIR=$(ITK_BINARY_DIR) -DTorch_DIR=$(Agent.BuildDirectory)/libtorch/share/cmake/Torch/ -DBUILD_TESTING=ON -DELASTIX_USE_GTEST=ON -DUSE_ALL_COMPONENTS=ON $(Build.Repository.LocalPath)
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Build Elastix'
inputs:
cmakeArgs: --build . --config Release -j 2
workingDirectory: $(ELASTIX_BINARY_DIR)
- task: CMake@1
displayName: 'CMake Generate externalproject'
inputs:
cmakeArgs: -DElastix_DIR=$(Agent.BuildDirectory)/Elastix-build $(ELASTIX_SOURCE_DIR)/dox/externalproject
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- task: CMake@1
displayName: 'CMake Build externalproject'
inputs:
cmakeArgs: --build .
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
- bash: ./elastix_impact_metric_example
workingDirectory: $(Agent.BuildDirectory)/externalproject-build
displayName: 'Run externalproject'
# Note: On macOS, we have not yet found how to successfully install requirements.txt for Python, so for the time being, we skip the tests.
# See also https://github.com/SuperElastix/elastix/issues/739
|
