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# Starting from emboss-explorer 2.2.0-6, files in /var/www were moved to more
# appropriate locations in /usr/share/emboss-explorer and
# /var/lib/emboss-explorer.
# path to the EMBOSS::GUI HTML files
our $HTML_PATH = "/usr/share/emboss-explorer/html";
# URL corresponding to $HTML_PATH above
our $HTML_URL = "/emboss-explorer";
# URL specifying the style sheet to use
our $STYLE_URL = "$HTML_URL/style/emboss.css";
# URL prefix to place before image links
our $IMAGE_URL = "$EMBOSS_HOME/doc/html/";
# URL prefix to place before manual links (only used in static pages)
our $MANUAL_URL = "/doc/emboss-explorer/html";
# path to the EMBOSS::GUI temporary output directory
our $OUTPUT_PATH = "/var/lib/emboss-explorer/output";
# URL corresponding to $OUTPUT_PATH above
our $OUTPUT_URL = "/emboss-explorer/output";
# prefix under which EMBOSS was installed
our $EMBOSS_PREFIX = "/usr";
# path to EMBOSS binaries
our $EMBOSS_BIN = "/usr/lib/emboss";
# path to EMBOSS installation
our $EMBOSS_HOME = "$EMBOSS_PREFIX/share/EMBOSS";
# path to EMBOSS ACD files
our $EMBOSS_ACDROOT = "$EMBOSS_HOME/acd";
# path to EMBOSS data
our $EMBOSS_DATA = "$EMBOSS_HOME/data";
# path to EMBOSS application manuals
our $EMBOSS_MANUAL = "$EMBOSS_HOME/doc/html";
# list of groups and applications to exclude from the main menu
our @EXCLUDED = (
"ACD",
"acdc",
"acdpretty",
"acdtable",
"acdtrace",
"acdvalid",
"UTILS DATABASE CREATION",
"aaindexextract",
"cutgextract",
"printsextract",
"prosextract",
"rebaseextract",
"tfextract",
"UTILS DATABASE INDEXING",
"dbiblast",
"dbifasta",
"dbiflat",
"dbigcg",
);
# number of seconds to delay between placeholder page refreshes
our $REFRESH_DELAY = 1;
# whether or not to display using frames
our $FRAMES = 1;
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