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<HTML>
<HEAD>
<TITLE>
EMBOSS
</TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" text="#000000">
<table align=center border=0 cellspacing=0 cellpadding=0>
<tr><td valign=top>
<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
</td>
<td align=left valign=middle>
<b><font size="+6">
EDIT
</font></b>
</td></tr>
</table>
<br>
<p>
<!--END OF HEADER-->
Sequence editing
<p>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="biosed.html">biosed</a></td>
<td>
Replace or delete sequence sections
</td>
</tr>
<tr>
<td><a href="codcopy.html">codcopy</a></td>
<td>
Reads and writes a codon usage table
</td>
</tr>
<tr>
<td><a href="cutseq.html">cutseq</a></td>
<td>
Removes a specified section from a sequence
</td>
</tr>
<tr>
<td><a href="degapseq.html">degapseq</a></td>
<td>
Removes gap characters from sequences
</td>
</tr>
<tr>
<td><a href="descseq.html">descseq</a></td>
<td>
Alter the name or description of a sequence
</td>
</tr>
<tr>
<td><a href="entret.html">entret</a></td>
<td>
Reads and writes (returns) flatfile entries
</td>
</tr>
<tr>
<td><a href="extractalign.html">extractalign</a></td>
<td>
Extract regions from a sequence alignment
</td>
</tr>
<tr>
<td><a href="extractfeat.html">extractfeat</a></td>
<td>
Extract features from a sequence
</td>
</tr>
<tr>
<td><a href="extractseq.html">extractseq</a></td>
<td>
Extract regions from a sequence
</td>
</tr>
<tr>
<td><a href="listor.html">listor</a></td>
<td>
Write a list file of the logical OR of two sets of sequences
</td>
</tr>
<tr>
<td><a href="makenucseq.html">makenucseq</a></td>
<td>
Creates random nucleotide sequences
</td>
</tr>
<tr>
<td><a href="makeprotseq.html">makeprotseq</a></td>
<td>
Creates random protein sequences
</td>
</tr>
<tr>
<td><a href="maskfeat.html">maskfeat</a></td>
<td>
Mask off features of a sequence
</td>
</tr>
<tr>
<td><a href="maskseq.html">maskseq</a></td>
<td>
Mask off regions of a sequence
</td>
</tr>
<tr>
<td><a href="newseq.html">newseq</a></td>
<td>
Type in a short new sequence
</td>
</tr>
<tr>
<td><a href="noreturn.html">noreturn</a></td>
<td>
Removes carriage return from ASCII files
</td>
</tr>
<tr>
<td><a href="notseq.html">notseq</a></td>
<td>
Exclude a set of sequences and write out the remaining ones
</td>
</tr>
<tr>
<td><a href="nthseq.html">nthseq</a></td>
<td>
Writes one sequence from a multiple set of sequences
</td>
</tr>
<tr>
<td><a href="pasteseq.html">pasteseq</a></td>
<td>
Insert one sequence into another
</td>
</tr>
<tr>
<td><a href="revseq.html">revseq</a></td>
<td>
Reverse and complement a sequence
</td>
</tr>
<tr>
<td><a href="seqret.html">seqret</a></td>
<td>
Reads and writes (returns) sequences
</td>
</tr>
<tr>
<td><a href="seqretsplit.html">seqretsplit</a></td>
<td>
Reads and writes (returns) sequences in individual files
</td>
</tr>
<tr>
<td><a href="skipseq.html">skipseq</a></td>
<td>
Reads and writes (returns) sequences, skipping first few
</td>
</tr>
<tr>
<td><a href="splitter.html">splitter</a></td>
<td>
Split a sequence into (overlapping) smaller sequences
</td>
</tr>
<tr>
<td><a href="trimest.html">trimest</a></td>
<td>
Trim poly-A tails off EST sequences
</td>
</tr>
<tr>
<td><a href="trimseq.html">trimseq</a></td>
<td>
Trim ambiguous bits off the ends of sequences
</td>
</tr>
<tr>
<td><a href="union.html">union</a></td>
<td>
Reads sequence fragments and builds one sequence
</td>
</tr>
<tr>
<td><a href="vectorstrip.html">vectorstrip</a></td>
<td>
Strips out DNA between a pair of vector sequences
</td>
</tr>
<tr>
<td><a href="yank.html">yank</a></td>
<td>
Reads a sequence range, appends the full USA to a list file
</td>
</tr>
</table>
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