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<HTML>

<HEAD>
  <TITLE>
  EMBOSS
  </TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" text="#000000">


<table align=center border=0 cellspacing=0 cellpadding=0>
<tr><td valign=top>
<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
</td>
<td align=left valign=middle>
<b><font size="+6">
NUCLEIC COMPOSITION
</font></b>
</td></tr>
</table>
<br>&nbsp;
<p>


<!--END OF HEADER-->





Composition of nucleotide sequences
<p>

<table border cellpadding=4 bgcolor="#FFFFF0">

<tr><th>Program name</th><th>Description</th></tr>

<tr>
<td><a href="banana.html">banana</a></td>
<td>
Bending and curvature plot in B-DNA
</td>
</tr>

<tr>
<td><a href="btwisted.html">btwisted</a></td>
<td>
Calculates the twisting in a B-DNA sequence
</td>
</tr>

<tr>
<td><a href="chaos.html">chaos</a></td>
<td>
Create a chaos game representation plot for a sequence
</td>
</tr>

<tr>
<td><a href="compseq.html">compseq</a></td>
<td>
Count composition of dimer/trimer/etc words in a sequence
</td>
</tr>

<tr>
<td><a href="dan.html">dan</a></td>
<td>
Calculates DNA RNA/DNA melting temperature
</td>
</tr>

<tr>
<td><a href="freak.html">freak</a></td>
<td>
Residue/base frequency table or plot
</td>
</tr>

<tr>
<td><a href="isochore.html">isochore</a></td>
<td>
Plots isochores in large DNA sequences
</td>
</tr>

<tr>
<td><a href="sirna.html">sirna</a></td>
<td>
Finds siRNA duplexes in mRNA
</td>
</tr>

<tr>
<td><a href="wordcount.html">wordcount</a></td>
<td>
Counts words of a specified size in a DNA sequence
</td>
</tr>


</table>



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