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<HTML>
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<TITLE>
EMBOSS
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<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
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<b><font size="+6">
NUCLEIC RNA FOLDING
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</table>
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<p>
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RNA folding methods and analysis
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<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="../embassy/vienna/vrnaalifold.html">vrnaalifold</a></td>
<td>
RNA alignment folding
</td>
</tr>
<tr>
<td><a href="../embassy/vienna/vrnaalifoldpf.html">vrnaalifoldpf</a></td>
<td>
RNA alignment folding with partition
</td>
</tr>
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<td><a href="../embassy/vienna/vrnacofold.html">vrnacofold</a></td>
<td>
RNA cofolding
</td>
</tr>
<tr>
<td><a href="../embassy/vienna/vrnacofoldconc.html">vrnacofoldconc</a></td>
<td>
RNA cofolding with concentrations
</td>
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<td><a href="../embassy/vienna/vrnacofoldpf.html">vrnacofoldpf</a></td>
<td>
RNA cofolding with partitioning
</td>
</tr>
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<td><a href="../embassy/vienna/vrnadistance.html">vrnadistance</a></td>
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RNA distances
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<td><a href="../embassy/vienna/vrnaduplex.html">vrnaduplex</a></td>
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RNA duplex calculation
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<td><a href="../embassy/vienna/vrnaeval.html">vrnaeval</a></td>
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RNA eval
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<td><a href="../embassy/vienna/vrnaevalpair.html">vrnaevalpair</a></td>
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RNA eval with cofold
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<td><a href="../embassy/vienna/vrnafold.html">vrnafold</a></td>
<td>
Calculate secondary structures of RNAs
</td>
</tr>
<tr>
<td><a href="../embassy/vienna/vrnafoldpf.html">vrnafoldpf</a></td>
<td>
Secondary structures of RNAs with partition
</td>
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<tr>
<td><a href="../embassy/vienna/vrnaheat.html">vrnaheat</a></td>
<td>
RNA melting
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<tr>
<td><a href="../embassy/vienna/vrnainverse.html">vrnainverse</a></td>
<td>
RNA sequences matching a structure
</td>
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<td><a href="../embassy/vienna/vrnalfold.html">vrnalfold</a></td>
<td>
Calculate locally stable secondary structures of RNAs
</td>
</tr>
<tr>
<td><a href="../embassy/vienna/vrnaplot.html">vrnaplot</a></td>
<td>
Plot vrnafold output
</td>
</tr>
<tr>
<td><a href="../embassy/vienna/vrnasubopt.html">vrnasubopt</a></td>
<td>
Calculate RNA suboptimals
</td>
</tr>
</table>
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