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<HTML>
<HEAD>
<TITLE>
EMBOSS
</TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" text="#000000">
<table align=center border=0 cellspacing=0 cellpadding=0>
<tr><td valign=top>
<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
</td>
<td align=left valign=middle>
<b><font size="+6">
PROTEIN MOTIFS
</font></b>
</td></tr>
</table>
<br>
<p>
<!--END OF HEADER-->
Protein motif searches
<p>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="antigenic.html">antigenic</a></td>
<td>
Finds antigenic sites in proteins
</td>
</tr>
<tr>
<td><a href="digest.html">digest</a></td>
<td>
Protein proteolytic enzyme or reagent cleavage digest
</td>
</tr>
<tr>
<td><a href="epestfind.html">epestfind</a></td>
<td>
Finds PEST motifs as potential proteolytic cleavage sites
</td>
</tr>
<tr>
<td><a href="fuzzpro.html">fuzzpro</a></td>
<td>
Protein pattern search
</td>
</tr>
<tr>
<td><a href="fuzztran.html">fuzztran</a></td>
<td>
Protein pattern search after translation
</td>
</tr>
<tr>
<td><a href="helixturnhelix.html">helixturnhelix</a></td>
<td>
Report nucleic acid binding motifs
</td>
</tr>
<tr>
<td><a href="oddcomp.html">oddcomp</a></td>
<td>
Find protein sequence regions with a biased composition
</td>
</tr>
<tr>
<td><a href="patmatdb.html">patmatdb</a></td>
<td>
Search a protein sequence with a motif
</td>
</tr>
<tr>
<td><a href="patmatmotifs.html">patmatmotifs</a></td>
<td>
Search a PROSITE motif database with a protein sequence
</td>
</tr>
<tr>
<td><a href="pepcoil.html">pepcoil</a></td>
<td>
Predicts coiled coil regions
</td>
</tr>
<tr>
<td><a href="preg.html">preg</a></td>
<td>
Regular expression search of a protein sequence
</td>
</tr>
<tr>
<td><a href="pscan.html">pscan</a></td>
<td>
Scans proteins using PRINTS
</td>
</tr>
<tr>
<td><a href="sigcleave.html">sigcleave</a></td>
<td>
Reports protein signal cleavage sites
</td>
</tr>
<tr>
<td><a href="../embassy/meme/omeme.html">omeme</a></td>
<td>
Motif detection
</td>
</tr>
<tr>
<td><a href="../embassy/memenew/emast.html">emast</a></td>
<td>
Motif detection
</td>
</tr>
<tr>
<td><a href="../embassy/memenew/ememe.html">ememe</a></td>
<td>
Motif detection
</td>
</tr>
</table>
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</HTML>
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