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|
#!/usr/bin/make -f
export DH_VERBOSE=1
%:
dh $@ --with autotools-dev,autoreconf
VERSION := $(shell dpkg-parsechangelog | grep Ver | cut -d' ' -f2 | cut -d- -f1)
RENAMED := cons pscan
EMBOSS-TMP = $(CURDIR)/debian/emboss_tmp
EMBOSS = $(CURDIR)/debian/emboss
EMBOSS-TEST = $(CURDIR)/debian/emboss-test
EMBOSS-LIB = $(CURDIR)/debian/emboss-lib
CONFFLAGS = --bindir=/usr/lib/emboss
CONFFLAGS += --libdir=/usr/lib/emboss/lib
CONFFLAGS += --includedir=/usr/lib/emboss/include
CONFFLAGS += --enable-systemlibs
CONFFLAGS += --with-java=/usr/lib/jvm/default-java/include
CONFFLAGS += --with-javaos=/usr/lib/jvm/default-java/include/linux
CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
CFLAGS:=$(shell dpkg-buildflags --get CFLAGS)
DEB_LDFLAGS += -lexpat
DEB_LDFLAGS += $(shell mysql_config --libs)
DEB_LDFLAGS += -lpq
DEB_LDFLAGS += $(shell dpkg-buildflags --get LDFLAGS)
#DEB_LDFLAGS += $(shell pg_config | grep LIBS | cut -f2 -d=)
override_dh_auto_configure:
dh_autotools-dev_updateconfig
dh_auto_configure -- $(CONFFLAGS)
override_dh_auto_build:
dh_auto_build -- AJAX_FIXED_ROOT=\\\"/usr/share/EMBOSS\\\" CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(DEB_LDFLAGS)"
override_dh_clean:
dh_autotools-dev_restoreconfig
rm --force --recursive debian/emboss_tmp
find jemboss/ -type f -name "*.class" | xargs -r rm -f
[ ! -d debian/testbackup ] || ( $(RM) --recursive test ; mv debian/testbackup test )
dh_clean --exclude=feattext.html~ config.status test-stamp install-stamp
override_dh_auto_install-arch:
### Binaries and data go to a temporary dir before being moved to their own package ###
$(MAKE) -C emboss install DESTDIR=$(EMBOSS-TMP)
# Make symbolic links from /usr/bin to /usr/lib/emboss
cd $(EMBOSS)/usr/bin/ ; \
for i in $(EMBOSS-TMP)/usr/lib/emboss/* ; \
do ln -sf ../lib/emboss/`basename $$i` . ; \
done
### Renaming conflicting binaries (see also in binary-arch) ###
for i in $(RENAMED) ; \
do mv $(EMBOSS)/usr/bin/$$i $(EMBOSS)/usr/bin/em_$$i ; \
done
### EMBOSS libraries go in the emboss-lib package. ###
$(MAKE) -C ajax install DESTDIR=$(EMBOSS-LIB)
$(MAKE) -C nucleus install DESTDIR=$(EMBOSS-LIB)
$(MAKE) -C plplot install DESTDIR=$(EMBOSS-LIB)
find $(EMBOSS-LIB)/usr/lib -name '*.la' -exec rm {} \;
### Documentation goes in emboss-doc. ###
$(MAKE) -C doc install DESTDIR=$(CURDIR)/debian/emboss-doc
antiword $(CURDIR)/debian/emboss-doc/usr/share/EMBOSS/doc/manuals/domainatrix.doc > $(CURDIR)/debian/emboss-doc/usr/share/EMBOSS/doc/manuals/domainatrix.txt
# Remove this file when the relicenced file becomes part of the upstream tarball.
uudecode -o $(CURDIR)/debian/emboss-doc/usr/share/EMBOSS/doc/manuals/EMBOSS_qg.pdf $(CURDIR)/debian/EMBOSS_qg_new.pdf.uu
override_dh_auto_install-indep:
$(MAKE) -C jemboss install DESTDIR=$(CURDIR)/debian/jemboss bindir=/usr/bin
# install target seems to remove executable flag which is claimed by lintian
find $(CURDIR)/debian/jemboss/usr/share/EMBOSS/jemboss/utils -type f -not -executable -name "*sh" -exec chmod a+x \{\} \;
# dangling LICEN[CS]E FILE
rm $(CURDIR)/debian/jemboss/usr/share/EMBOSS/jemboss/LICENSE
### Installation of the test suite
cp -a test $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/
sed -i "/SET emboss_tempdata/cSET emboss_tempdata /usr/share/EMBOSS/test" $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/test/.embossrc
sed -i "/SET emboss_qadata/cSET emboss_qadata /usr/share/EMBOSS/test" $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/test/.embossrc
mv $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/test/.embossrc $(CURDIR)/debian/emboss-test/etc/emboss/embossrc.d/emboss-test
find $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/test/data -executable -type f -exec chmod a-x \{\} \;
find $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/test -type d -name CVS | xargs rm -rf
find $(CURDIR)/debian/emboss-test/usr/share/EMBOSS/test -type f -name .cvsignore -delete
override_dh_auto_test:
$(RM) test-stamp
[ -d debian/testbackup ] || cp -a test debian/testbackup
sed -i "/SET emboss_tempdata/cSET emboss_tempdata $(CURDIR)/test" test/.embossrc
sed -i "/SET emboss_qadata/cSET emboss_qadata $(CURDIR)/test" test/.embossrc
echo "SET emboss_acdroot $(CURDIR)/emboss/acd" >> test/.embossrc
echo "SET emboss_data $(CURDIR)/emboss/data" >> test/.embossrc
echo "SET emboss_docroot $(CURDIR)/doc" >> test/.embossrc
cd test/qa && LS_COLORS='' EMBOSSRC=$(CURDIR)/test PATH=$(CURDIR)/emboss:$$PATH EMBOSS_ROOT=../../../ ./qatest.csh
override_dh_installchangelogs:
dh_installchangelogs -k ChangeLog
override_dh_installman:
dh_installman -a -p emboss
for i in $(RENAMED) ; \
do dh_link usr/share/man/man1/$$i.1e.gz usr/share/man/man1/em_$$i.1e.gz ; \
done
override_dh_builddeb:
dh_builddeb -- -Z xz
# Target to refresh the manpages; needs libemboss-acd-perl, xsltproc, docbook-xml and docbook-xsl
manpages: debian/manpages/success
debian/manpages/success:
debian/build-manpages.sh
echo "The manpages have been sucessfully built" > debian/manpages/success
|
