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<HTML>
<HEAD>
<TITLE>
EMBOSS: ajtest
</TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" text="#000000">
<table align=center bgcolor="#000070" border=0 cellspacing=0 cellpadding=10>
<tr>
<td>
<a href="index.html" onmouseover="self.status='Go to the EMBOSS home page';return true">
<img border=0 src="emboss_icon.gif" alt="" width=55 height=55>
</a>
</td>
<td align=middle valign=middle>
<font face="Arial,Helvetica" size=6 color="#ffffff">
<H2>
EMBOSS: ajtest
</H2>
</font>
</td>
</tr>
</table>
</td>
</tr>
</table>
<p><hr><p>
<H1>
Program ajtest
</H1>
<H2>
Function
</H2>
<!--
DON'T WRITE ANYTHING HERE.
IT IS DONE FOR YOU.
-->
Test file for ACD parsing
<H2>
Description
</H2>
If you are not interested in developing EMBOSS programs yourself, then
you should stop reading now.
<br>
Read no further.
<p>
<b>ajtest</b> is of no use to you.
<p>
<b>ajtest</b> is simply the name given to a generic test program that is
used to evaluate the behaviour of various EMBOSS functions during the
writing of other programs. The contents of this program will change
depending on whatever programs were last being developed when this
EMBOSS release was made public.
<p>
<b>ajtest</b> serves no purpose that is useful for the general user
community. It is only useful as a general-purpose program to serve as a
test-bed for developers.
<p>
It is here simply as a useful generic application for people creating
new library functions that they wish to call in the context of a real
EMBOSS program.
<H2>
Usage
</H2>
Here is a sample session with ajtest.
<pre>
% ajtest
</pre>
(You are less than impressed, I can tell.)
<H2>
Command line arguments
</H2>
<!--
DON'T WRITE ANYTHING HERE.
IT IS DONE FOR YOU.
-->
<table CELLSPACING=0 CELLPADDING=3 BGCOLOR="#f5f5ff" ><tr><td>
<pre>
Mandatory qualifiers:
[-sequence] seqall Sequence database USA
[-seqset] seqset Sequence set USA
Optional qualifiers: (none)
Advanced qualifiers: (none)
General qualifiers:
-help bool report command line options. More
information on associated and general
qualifiers can be found with -help -verbose
</pre>
</td></tr></table>
<P>
<table border cellspacing=0 cellpadding=3 bgcolor="#f5f5ff">
<tr bgcolor="#FFFFD0">
<th align="left" colspan=2>Mandatory qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>
<tr>
<td>[-sequence]<br>(Parameter 1)</td>
<td>Sequence database USA</td>
<td>Readable sequence(s)</td>
<td><b>Required</b></td>
</tr>
<tr>
<td>[-seqset]<br>(Parameter 2)</td>
<td>Sequence set USA</td>
<td>Readable sequences</td>
<td><b>Required</b></td>
</tr>
<tr bgcolor="#FFFFD0">
<th align="left" colspan=2>Optional qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>
<tr>
<td colspan=4>(none)</td>
</tr>
<tr bgcolor="#FFFFD0">
<th align="left" colspan=2>Advanced qualifiers</th>
<th align="left">Allowed values</th>
<th align="left">Default</th>
</tr>
<tr>
<td colspan=4>(none)</td>
</tr>
</table>
<p>
(Of course, the parameters could be changed completely in the next release.)
<H2>
Input file format
</H2>
That depends.
<H2>
Output file format
</H2>
Could be anything.
<H2>
Data files
</H2>
Possibly.
<H2>
Notes
</H2>
Take no notice of this program.
<H2>
References
</H2>
None whatsoever.
<H2>
Warnings
</H2>
WARNING!
<br>
WARNING!
<br>
WARNING!
<br>
WARNING!
<p>
You have been warned.
<H2>
Diagnostic Error Messages
</H2>
Maybe.
<H2>
Exit status
</H2>
Might not exit.
<H2>
Known bugs
</H2>
Hopefully none, but you could edit the source file and add some, if you
have set up your own copy of EMBOSS.
<!--
<H2>
See also
</H2>
-->
<h2><a name="See also">See also</a></h2>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr><td><a href="seqretallfeat.html">seqretallfeat</a></td><td>Reads and writes (returns) one or more sequences</td></tr>
</table>
<!--
Add any comments about other associated programs (to prepare
data files?) that seealso doesn't find.
-->
<H2>
Author(s)
</H2>
This application is used for general testing and is not considered an
official part of EMBOSS. Authorship and code may change without
notice.
<H2>
History
</H2>
<H2>
Target users
</H2>
This program is not intended to be used by anyone except application
developers.
<H2>
Comments
</H2>
<pre>
</pre>
</TD></TR></TABLE>
</CENTER>
</BODY>
</HTML>
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