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<HTML>
<HEAD>
<TITLE>
EMBOSS
</TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" text="#000000">
<table align=center border=0 cellspacing=0 cellpadding=0>
<tr><td valign=top>
<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
</td>
<td align=left valign=middle>
<b><font size="+6">
ALIGNMENT MULTIPLE
</font></b>
</td></tr>
</table>
<br>
<p>
<!--END OF HEADER-->
Multiple sequence alignment
<p>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="edialign.html">edialign</a></td>
<td>
Local multiple alignment of sequences
</td>
</tr>
<tr>
<td><a href="emma.html">emma</a></td>
<td>
Multiple sequence alignment (ClustalW wrapper)
</td>
</tr>
<tr>
<td><a href="infoalign.html">infoalign</a></td>
<td>
Display basic information about a multiple sequence alignment
</td>
</tr>
<tr>
<td><a href="plotcon.html">plotcon</a></td>
<td>
Plot conservation of a sequence alignment
</td>
</tr>
<tr>
<td><a href="prettyplot.html">prettyplot</a></td>
<td>
Draw a sequence alignment with pretty formatting
</td>
</tr>
<tr>
<td><a href="showalign.html">showalign</a></td>
<td>
Display a multiple sequence alignment in pretty format
</td>
</tr>
<tr>
<td><a href="tranalign.html">tranalign</a></td>
<td>
Generate an alignment of nucleic coding regions from aligned proteins
</td>
</tr>
<tr>
<td><a href="../embassy/clustalomega/eomega.html">eomega</a></td>
<td>
Multiple sequence alignment (ClustalO wrapper)
</td>
</tr>
<tr>
<td><a href="../embassy/clustalomega/eomegapp.html">eomegapp</a></td>
<td>
Profile with profile (ClustalO wrapper)
</td>
</tr>
<tr>
<td><a href="../embassy/clustalomega/eomegaps.html">eomegaps</a></td>
<td>
Single sequence with profile (ClustalO wrapper)
</td>
</tr>
<tr>
<td><a href="../embassy/clustalomega/eomegash.html">eomegash</a></td>
<td>
Sequence with HMM (ClustalO wrapper)
</td>
</tr>
<tr>
<td><a href="../embassy/clustalomega/eomegasp.html">eomegasp</a></td>
<td>
Sequence with profile (ClustalO wrapper)
</td>
</tr>
<tr>
<td><a href="../embassy/mse/mse.html">mse</a></td>
<td>
Multiple sequence editor
</td>
</tr>
</table>
</BODY>
</HTML>
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